ENSDARG00000020079


Danio rerio

Features
Gene ID: ENSDARG00000020079
  
Biological name :neil3
  
Synonyms : neil3 / nei-like DNA glycosylase 3
  
Possible biological names infered from orthology : Endonuclease 8-like 2 / Endonuclease 8-like 3 / NEIL2 / nei like DNA glycosylase 2 / Q6R2P8 / Q8K203 / Q8TAT5 / Q969S2
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 36414856
Gene end: 36428437
  
Corresponding Affymetrix probe sets: Dr.17827.1.S1_at (Zebrafish Array)   NM_001007335_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000109273
Ensembl peptide - ENSDARP00000008228
NCBI entrez gene - 492463     See in Manteia.
RefSeq - XM_005157318
RefSeq - NM_001007335
RefSeq Peptide - NP_001007336
swissprot - F1R7V7
swissprot - F1Q570
ZFIN ID - ZDB-GENE-041114-18
Ensembl - ENSDARG00000020079
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000010719Gallus gallus
 NEIL2ENSGALG00000016664Gallus gallus
 NEIL2ENSG00000154328Homo sapiens
 NEIL3ENSG00000109674Homo sapiens
 Neil2ENSMUSG00000035121Mus musculus
 Neil3ENSMUSG00000039396Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000214  Zinc finger, DNA glycosylase/AP lyase-type
 IPR001876  Zinc finger, RanBP2-type
 IPR010666  Zinc finger, GRF-type
 IPR010979  Ribosomal protein S13-like, H2TH
 IPR012319  Formamidopyrimidine-DNA glycosylase, catalytic domain
 IPR015886  DNA glycosylase/AP lyase, H2TH DNA-binding
 IPR015887  DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006284 base-excision repair IEA
 biological_processGO:0006289 nucleotide-excision repair IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003684 damaged DNA binding IEA
 molecular_functionGO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of the damaged pyrimidine
APEX1-Independent Resolution of AP Sites via the Single Nucleotide Replacement Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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