ENSDARG00000020504


Danio rerio

Features
Gene ID: ENSDARG00000020504
  
Biological name :h3f3b.1
  
Synonyms : h3f3b.1 / H3 histone, family 3B.1 / Q6PI20
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 45776370
Gene end: 45778123
  
Corresponding Affymetrix probe sets: Dr.10279.1.S1_at (Zebrafish Array)   NM_212996_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000154528
Ensembl peptide - ENSDARP00000120344
NCBI entrez gene - 406269     See in Manteia.
RefSeq - NM_212996
RefSeq - XM_017353759
RefSeq Peptide - NP_998161
swissprot - Q6PI20
swissprot - B2GSF5
ZFIN ID - ZDB-GENE-050417-65
Ensembl - ENSDARG00000020504
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H3F3CENSGALG00000020078Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6PI20 / h3f3b.1 / H3 histone, family 3B.1 / H3F3A* / P84243* / H3 histone family member 3A*ENSDARG00000068434100
h3f3d / Q6PI20 / h3f3b.1 / H3 histone, family 3D / H3f3a* / P84244* / Histone H3.3 *ENSDARG00000045248100
Q6PI20 / h3f3b.1 / H3 histone, family 3B.1 / H3F3B* / H3F3C* / P84243* / Q6NXT2* / H3 histone family member 3C* / H3 histone family member 3B*ENSDARG00000068436100
h3f3c / Q6PI20 / h3f3b.1 / H3 histone, family 3CENSDARG00000033009100
Q4QRF4 / CU457819.3 / Histone H3.2 / Q71DI3* / HIST2H3C* / histone cluster 2 H3 family member c*ENSDARG0000010541897
CR762436.1 / P84228* / Hist2h3c1* / Histone H3.2 *ENSDARG0000011237597
CU302436.5 / P84228* / Hist1h3d* / Hist1h3f* / Histone H3.2 *ENSDARG0000011450097
CR762436.2 / Q71DI3* / HIST2H3D* / histone cluster 2 H3 family member d*ENSDARG0000011296797
Q4QRF4 / CU459186.3 / Histone H3.2 ENSDARG0000010381997
si:dkey-108k21.24ENSDARG0000011264797
Q4QRF4 / CU457819.2 / Histone H3.2 ENSDARG0000010537497
Q4QRF4 / zgc:113983ENSDARG0000006894197
HIST2H3C / zgc:173552 / Q71DI3* / histone cluster 2 H3 family member c*ENSDARG0000011564497
Q4QRF4 / FP325123.2 / Histone H3.2 / P04908* / P84228* / Hist1h3e* / HIST1H2AB* / HIST1H2AE* / histone cluster 1 H2A family member e* / histone cluster 1 H2A family member b*ENSDARG0000010548497
Q4QRF4 / hist2h3c / histone cluster 2, H3cENSDARG0000009415497
Q4QRF4 / CU457819.4 / Histone H3.2 ENSDARG0000010545997
Q4QRF4 / FP325123.1 / Histone H3.2 ENSDARG0000010535997
Q4QRF4 / CU459186.1 / Histone H3.2 ENSDARG0000009897097
FQ312024.1ENSDARG0000011437097
Q4QRF4 / CU459186.2 / Histone H3.2 ENSDARG0000010172097


Protein motifs (from Interpro)
Interpro ID Name
 IPR000164  Histone H3/CENP-A
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IBA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0031492 nucleosomal DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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