ENSDARG00000033009


Danio rerio

Features
Gene ID: ENSDARG00000033009
  
Biological name :h3f3c
  
Synonyms : h3f3b.1 / h3f3c / H3 histone, family 3C / Q6PI20
  
Possible biological names infered from orthology : H3f3b / Histone H3.3 / P84244
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 36944533
Gene end: 36949476
  
Corresponding Affymetrix probe sets: Dr.9145.1.S1_at (Zebrafish Array)   NM_200003_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000148220
Ensembl peptide - ENSDARP00000047268
NCBI entrez gene - 336231     See in Manteia.
RefSeq - NM_200003
RefSeq Peptide - NP_956297
swissprot - B2GSF5
swissprot - Q6PI20
ZFIN ID - ZDB-GENE-030131-8175
ZFIN ID - ZDB-GENE-050417-65
Ensembl - ENSDARG00000033009
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H3F3CENSGALG00000020078Gallus gallus
 H3f3bENSMUSG00000016559Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6PI20 / h3f3b.1 / H3 histone, family 3B.1 / H3F3A* / P84243* / H3 histone family member 3A*ENSDARG00000068434100
h3f3d / Q6PI20 / h3f3b.1 / H3 histone, family 3D / H3f3a* / P84244* / Histone H3.3 *ENSDARG00000045248100
Q6PI20 / h3f3b.1 / H3 histone, family 3B.1 / H3F3B* / H3F3C* / P84243* / Q6NXT2* / H3 histone family member 3C* / H3 histone family member 3B*ENSDARG00000068436100
Q6PI20 / h3f3b.1 / H3 histone, family 3B.1ENSDARG00000020504100
Q4QRF4 / CU457819.3 / Histone H3.2 / Q71DI3* / HIST2H3C* / histone cluster 2 H3 family member c*ENSDARG0000010541897
CR762436.1 / P84228* / Hist2h3c1* / Histone H3.2 *ENSDARG0000011237597
CU302436.5 / P84228* / Hist1h3d* / Hist1h3f* / Histone H3.2 *ENSDARG0000011450097
CR762436.2 / Q71DI3* / HIST2H3D* / histone cluster 2 H3 family member d*ENSDARG0000011296797
Q4QRF4 / CU459186.3 / Histone H3.2 ENSDARG0000010381997
si:dkey-108k21.24ENSDARG0000011264797
Q4QRF4 / CU457819.2 / Histone H3.2 ENSDARG0000010537497
Q4QRF4 / zgc:113983ENSDARG0000006894197
HIST2H3C / zgc:173552 / Q71DI3* / histone cluster 2 H3 family member c*ENSDARG0000011564497
Q4QRF4 / FP325123.2 / Histone H3.2 / P04908* / P84228* / Hist1h3e* / HIST1H2AB* / HIST1H2AE* / histone cluster 1 H2A family member e* / histone cluster 1 H2A family member b*ENSDARG0000010548497
Q4QRF4 / hist2h3c / histone cluster 2, H3cENSDARG0000009415497
Q4QRF4 / CU457819.4 / Histone H3.2 ENSDARG0000010545997
Q4QRF4 / FP325123.1 / Histone H3.2 ENSDARG0000010535997
Q4QRF4 / CU459186.1 / Histone H3.2 ENSDARG0000009897097
FQ312024.1ENSDARG0000011437097
Q4QRF4 / CU459186.2 / Histone H3.2 ENSDARG0000010172097


Protein motifs (from Interpro)
Interpro ID Name
 IPR000164  Histone H3/CENP-A
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IBA
 cellular_componentGO:0000786 nucleosome IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0031492 nucleosomal DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
Oxidative Stress Induced Senescence
Senescence-Associated Secretory Phenotype (SASP)
SIRT1 negatively regulates rRNA expression
NoRC negatively regulates rRNA expression
B-WICH complex positively regulates rRNA expression
Transcriptional regulation by small RNAs
Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3
RNA Polymerase I Promoter Opening
RNA Polymerase I Chain Elongation
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
Estrogen-dependent gene expression
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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