ENSDARG00000020529


Danio rerio

Features
Gene ID: ENSDARG00000020529
  
Biological name :hacl1
  
Synonyms : 2-hydroxyacyl-CoA lyase 1 / hacl1
  
Possible biological names infered from orthology : Q9QXE0 / Q9UJ83
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 20167811
Gene end: 20194385
  
Corresponding Affymetrix probe sets: Dr.19742.1.S1_a_at (Zebrafish Array)   Dr.26096.1.S1_x_at (Zebrafish Array)   Dr.7241.1.A1_at (Zebrafish Array)   NM_213085_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000123780
Ensembl peptide - ENSDARP00000005715
NCBI entrez gene - 406358     See in Manteia.
RefSeq - NM_213085
RefSeq Peptide - NP_998250
swissprot - F8W559
swissprot - F1RB36
ZFIN ID - ZDB-GENE-040426-2058
Ensembl - ENSDARG00000020529
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HACL1ENSGALG00000011211Gallus gallus
 HACL1ENSG00000131373Homo sapiens
 Hacl1ENSMUSG00000021884Mus musculus
 Hacl1ENSMUSG00000115022Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ilvbl / Q6NV04 / ilvB (bacterial acetolactate synthase)-like / Q8BU33* / A1L0T0* / ilvB acetolactate synthase like* / Mus musculus ilvB (bacterial acetolactate synthase)-like (Ilvbl), trans...ENSDARG0000001712624


Protein motifs (from Interpro)
Interpro ID Name
 IPR011766  Thiamine pyrophosphate enzyme, C-terminal TPP-binding
 IPR012000  Thiamine pyrophosphate enzyme, central domain
 IPR012001  Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
 IPR029035  DHS-like NAD/FAD-binding domain superfamily
 IPR029061  Thiamin diphosphate-binding fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0030976 thiamine pyrophosphate binding IEA


Pathways (from Reactome)
Pathway description
Alpha-oxidation of phytanate
Peroxisomal protein import


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr