ENSDARG00000027109


Danio rerio

Features
Gene ID: ENSDARG00000027109
  
Biological name :zfr
  
Synonyms : zfr / zinc finger RNA binding protein
  
Possible biological names infered from orthology : O88532 / Q96KR1
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 41124098
Gene end: 41142768
  
Corresponding Affymetrix probe sets: Dr.2055.1.A1_at (Zebrafish Array)   NM_199558_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000069275
Ensembl peptide - ENSDARP00000109307
NCBI entrez gene - 321659     See in Manteia.
RefSeq - NM_199558
RefSeq Peptide - NP_955852
swissprot - E7EZB4
swissprot - A2BGG2
ZFIN ID - ZDB-GENE-030131-378
Ensembl - ENSDARG00000027109
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000034488Gallus gallus
 ENSGALG00000003235Gallus gallus
 ZFRENSG00000056097Homo sapiens
 ZfrENSMUSG00000022201Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zfr2 / zinc finger RNA binding protein 2 / Q9UPR6*ENSDARG0000007168350
ilf3b / interleukin enhancer binding factor 3b / ILF3* / Q9Z1X4* / Q12906* / interleukin enhancer binding factor 3*ENSDARG0000010517718
ilf3a / interleukin enhancer binding factor 3aENSDARG0000005866018
strbp / spermatid perinuclear RNA binding protein / Q91WM1* / Q96SI9*ENSDARG0000002145516
ilf2 / Q6NZ06 / interleukin enhancer binding factor 2 / Q12905* / Q9CXY6*ENSDARG000000145919


Protein motifs (from Interpro)
Interpro ID Name
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR006561  DZF domain
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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