ENSDARG00000027586


Danio rerio

Features
Gene ID: ENSDARG00000027586
  
Biological name :top3b
  
Synonyms : DNA topoisomerase III beta / top3b
  
Possible biological names infered from orthology : O95985 / Q9Z321 / topoisomerase (DNA) III beta
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 13211452
Gene end: 13251907
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000035935
Ensembl peptide - ENSDARP00000143537
NCBI entrez gene - 793414     See in Manteia.
swissprot - F1QNX4
ZFIN ID - ZDB-GENE-070705-37
Ensembl - ENSDARG00000027586
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TOP3BENSGALG00000030051Gallus gallus
 TOP3BENSG00000100038Homo sapiens
 Top3bENSMUSG00000022779Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
top3a / DNA topoisomerase III alpha / O70157* / Q13472* / topoisomerase (DNA) III alpha*ENSDARG0000005282733


Protein motifs (from Interpro)
Interpro ID Name
 IPR000380  DNA topoisomerase, type IA
 IPR003601  DNA topoisomerase, type IA, domain 2
 IPR003602  DNA topoisomerase, type IA, DNA-binding domain
 IPR006171  TOPRIM domain
 IPR013497  DNA topoisomerase, type IA, central
 IPR013825  DNA topoisomerase, type IA, central region, subdomain 2
 IPR023405  DNA topoisomerase, type IA, core domain
 IPR023406  DNA topoisomerase, type IA, active site
 IPR034144  DNA topoisomerase 3-like, TOPRIM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006265 DNA topological change IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003916 DNA topoisomerase activity IBA
 molecular_functionGO:0003917 DNA topoisomerase type I activity IEA
 molecular_functionGO:0016853 isomerase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr