ENSGALG00000030051


Gallus gallus

Features
Gene ID: ENSGALG00000030051
  
Biological name :TOP3B
  
Synonyms : DNA topoisomerase III beta / TOP3B
  
Possible biological names infered from orthology : O95985 / Q9Z321 / topoisomerase (DNA) III beta
  
Species: Gallus gallus
  
Chr. number: 15
Strand: 1
Band:
Gene start: 452284
Gene end: 466066
  
Corresponding Affymetrix probe sets: Gga.16362.1.S1_s_at (Chicken Array)   Gga.3414.1.S1_at (Chicken Array)   GgaAffx.12316.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052686
NCBI entrez gene - 416771     See in Manteia.
RefSeq - XM_015275236
RefSeq - NM_001006181
RefSeq - XM_015275233
RefSeq - XM_015275235
RefSeq Peptide - NP_001006181
swissprot - Q5ZK71
Ensembl - ENSGALG00000030051
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 top3bENSDARG00000027586Danio rerio
 TOP3BENSG00000100038Homo sapiens
 Top3bENSMUSG00000022779Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TOP3A / DNA topoisomerase 3-alpha isoform 1 / O70157* / Q13472* / DNA topoisomerase III alpha* / topoisomerase (DNA) III alpha*ENSGALG0000000502830


Protein motifs (from Interpro)
Interpro ID Name
 IPR000380  DNA topoisomerase, type IA
 IPR003601  DNA topoisomerase, type IA, domain 2
 IPR003602  DNA topoisomerase, type IA, DNA-binding domain
 IPR006171  TOPRIM domain
 IPR013497  DNA topoisomerase, type IA, central
 IPR013824  DNA topoisomerase, type IA, central region, subdomain 1
 IPR013825  DNA topoisomerase, type IA, central region, subdomain 2
 IPR023405  DNA topoisomerase, type IA, core domain
 IPR023406  DNA topoisomerase, type IA, active site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006265 DNA topological change IBA
 biological_processGO:0007059 chromosome segregation IEA
 cellular_componentGO:0000793 condensed chromosome IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003916 DNA topoisomerase activity IBA
 molecular_functionGO:0003917 DNA topoisomerase type I activity IEA
 molecular_functionGO:0016853 isomerase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr