ENSDARG00000028335


Danio rerio

Features
Gene ID: ENSDARG00000028335
  
Biological name :hmga1a
  
Synonyms : high mobility group AT-hook 1a / hmga1a
  
Possible biological names infered from orthology : high mobility group AT-hook 1 / High mobility group protein HMG-I/HMG-Y / HMGA1 / Hmga1b / P17095 / P17096
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 3751451
Gene end: 3759692
  
Corresponding Affymetrix probe sets: Dr.20010.1.S1_at (Zebrafish Array)   Dr.20010.1.S2_at (Zebrafish Array)   Dr.20010.10.A1_at (Zebrafish Array)   Dr.20010.13.S1_at (Zebrafish Array)   NM_213168_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000117564
Ensembl peptide - ENSDARP00000154454
Ensembl peptide - ENSDARP00000134077
Ensembl peptide - ENSDARP00000118077
Ensembl peptide - ENSDARP00000036107
Ensembl peptide - ENSDARP00000114774
Ensembl peptide - ENSDARP00000115025
NCBI entrez gene - 406447     See in Manteia.
RefSeq - XM_005161904
RefSeq - NM_001289906
RefSeq - NM_001289907
RefSeq - NM_213168
RefSeq Peptide - NP_998333
RefSeq Peptide - NP_001276835
RefSeq Peptide - NP_001276836
swissprot - E9QEA0
swissprot - E9QD31
swissprot - A0A0R4IEW9
swissprot - Q6NV11
ZFIN ID - ZDB-GENE-010502-1
Ensembl - ENSDARG00000028335
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGA1ENSGALG00000030396Gallus gallus
 HMGA1ENSG00000137309Homo sapiens
 Hmga1ENSMUSG00000046711Mus musculus
 Hmga1bENSMUSG00000078249Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmga1b / high mobility group AT-hook 1b / HMGA1* / P17095* / P17096* / high mobility group AT-hook 1* / High mobility group protein HMG-I/HMG-Y *ENSDARG0000007095152


Protein motifs (from Interpro)
Interpro ID Name
 IPR000116  High mobility group protein HMGA
 IPR000637  HMG-I/HMG-Y, DNA-binding, conserved site
 IPR017956  AT hook, DNA-binding motif
 IPR031079  High mobility group protein HMGA1, mammal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006284 base-excision repair IBA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0043484 regulation of RNA splicing IMP
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IBA


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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