ENSDARG00000070951


Danio rerio

Features
Gene ID: ENSDARG00000070951
  
Biological name :hmga1b
  
Synonyms : high mobility group AT-hook 1b / hmga1b
  
Possible biological names infered from orthology : high mobility group AT-hook 1 / High mobility group protein HMG-I/HMG-Y / HMGA1 / P17095 / P17096
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 54142311
Gene end: 54152983
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000128816
NCBI entrez gene - 768130     See in Manteia.
RefSeq - NM_001077276
RefSeq Peptide - NP_001070744
swissprot - Q08BD1
ZFIN ID - ZDB-GENE-061013-204
Ensembl - ENSDARG00000070951
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMGA1ENSGALG00000030396Gallus gallus
 HMGA1ENSG00000137309Homo sapiens
 Hmga1ENSMUSG00000046711Mus musculus
 Hmga1bENSMUSG00000078249Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmga1a / high mobility group AT-hook 1a / HMGA1* / Hmga1b* / P17095* / P17096* / high mobility group AT-hook 1* / High mobility group protein HMG-I/HMG-Y *ENSDARG0000002833558


Protein motifs (from Interpro)
Interpro ID Name
 IPR000116  High mobility group protein HMGA
 IPR017956  AT hook, DNA-binding motif
 IPR031079  High mobility group protein HMGA1, mammal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006284 base-excision repair IBA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IBA


Pathways (from Reactome)
Pathway description
Formation of Senescence-Associated Heterochromatin Foci (SAHF)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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