ENSDARG00000028982


Danio rerio

Features
Gene ID: ENSDARG00000028982
  
Biological name :pcca
  
Synonyms : pcca / propionyl CoA carboxylase, alpha polypeptide
  
Possible biological names infered from orthology : DCUN1D1 / defective in cullin neddylation 1 domain containing 1 / P05165 / propionyl-CoA carboxylase alpha subunit / propionyl-Coenzyme A carboxylase, alpha polypeptide / Q91ZA3 / Q96GG9
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 29862074
Gene end: 29953746
  
Corresponding Affymetrix probe sets: Dr.23782.1.A1_at (Zebrafish Array)   Dr.23782.2.S1_at (Zebrafish Array)   NM_001002746_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000117212
Ensembl peptide - ENSDARP00000122752
Ensembl peptide - ENSDARP00000121906
NCBI entrez gene - 437019     See in Manteia.
RefSeq - NM_001002746
RefSeq Peptide - NP_001002746
swissprot - B0S5E3
swissprot - B0S5E2
swissprot - F1QPL7
ZFIN ID - ZDB-GENE-040718-246
Ensembl - ENSDARG00000028982
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCCAENSGALG00000016872Gallus gallus
 PCCAENSG00000175198Homo sapiens
 Q96GG9ENSG00000043093Homo sapiens
 PccaENSMUSG00000041650Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mccc1 / methylcrotonoyl-CoA carboxylase 1 (alpha) / Q96RQ3* / Q99MR8* / methylcrotonoyl-CoA carboxylase 1* / Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial *ENSDARG0000010253832


Protein motifs (from Interpro)
Interpro ID Name
 IPR000089  Biotin/lipoyl attachment
 IPR001882  Biotin-binding site
 IPR005479  Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
 IPR005481  Biotin carboxylase-like, N-terminal domain
 IPR005482  Biotin carboxylase, C-terminal
 IPR011053  Single hybrid motif
 IPR011054  Rudiment single hybrid motif
 IPR011761  ATP-grasp fold
 IPR011764  Biotin carboxylation domain
 IPR013815  ATP-grasp fold, subdomain 1
 IPR016185  Pre-ATP-grasp domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Biotin transport and metabolism
Propionyl-CoA catabolism
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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