ENSG00000175198


Homo sapiens

Features
Gene ID: ENSG00000175198
  
Biological name :PCCA
  
Synonyms : P05165 / PCCA / propionyl-CoA carboxylase alpha subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: 1
Band: q32.3
Gene start: 100089015
Gene end: 100530437
  
Corresponding Affymetrix probe sets: 203860_at (Human Genome U133 Plus 2.0 Array)   216533_at (Human Genome U133 Plus 2.0 Array)   232376_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489804
Ensembl peptide - ENSP00000411194
Ensembl peptide - ENSP00000489974
Ensembl peptide - ENSP00000495663
Ensembl peptide - ENSP00000490939
Ensembl peptide - ENSP00000490843
Ensembl peptide - ENSP00000490290
Ensembl peptide - ENSP00000365456
Ensembl peptide - ENSP00000365462
Ensembl peptide - ENSP00000365463
Ensembl peptide - ENSP00000390850
Ensembl peptide - ENSP00000396050
Ensembl peptide - ENSP00000399413
Ensembl peptide - ENSP00000400740
NCBI entrez gene - 5095     See in Manteia.
OMIM - 232000
RefSeq - XM_017020618
RefSeq - XM_011521093
RefSeq - XM_017020605
RefSeq - XM_017020606
RefSeq - XM_017020607
RefSeq - XM_017020608
RefSeq - XM_017020609
RefSeq - XM_017020610
RefSeq - XM_017020611
RefSeq - XM_017020612
RefSeq - XM_017020613
RefSeq - XM_017020614
RefSeq - XM_017020615
RefSeq - XM_017020616
RefSeq - XM_017020617
RefSeq - NM_000282
RefSeq - NM_001127692
RefSeq - NM_001178004
RefSeq - XM_005254059
RefSeq Peptide - NP_001121164
RefSeq Peptide - NP_001171475
RefSeq Peptide - NP_000273
swissprot - A0A1B0GU58
swissprot - H0Y4B9
swissprot - H0Y5U0
swissprot - H0Y798
swissprot - Q5JTW6
swissprot - Q5JVH2
swissprot - A0A1B0GTR1
swissprot - A0A1B0GWI4
swissprot - P05165
swissprot - A0A1B0GWA1
swissprot - A0A1B0GUX9
Ensembl - ENSG00000175198
  
Related genetic diseases (OMIM): 606054 - Propionicacidemia, 606054
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pccaENSDARG00000028982Danio rerio
 PCCAENSGALG00000016872Gallus gallus
 PccaENSMUSG00000041650Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MCCC1 / Q96RQ3 / methylcrotonoyl-CoA carboxylase 1ENSG0000007807037
Q96GG9 / DCUN1D1 / defective in cullin neddylation 1 domain containing 1ENSG000000430935


Protein motifs (from Interpro)
Interpro ID Name
 IPR000089  Biotin/lipoyl attachment
 IPR001882  Biotin-binding site
 IPR005479  Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
 IPR005481  Biotin carboxylase-like, N-terminal domain
 IPR005482  Biotin carboxylase, C-terminal
 IPR011053  Single hybrid motif
 IPR011054  Rudiment single hybrid motif
 IPR011761  ATP-grasp fold
 IPR011764  Biotin carboxylation domain
 IPR013815  ATP-grasp fold, subdomain 1
 IPR016185  Pre-ATP-grasp domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006768 biotin metabolic process TAS
 biological_processGO:0019626 short-chain fatty acid catabolic process TAS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004075 biotin carboxylase activity IEA
 molecular_functionGO:0004658 propionyl-CoA carboxylase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0009374 biotin binding TAS
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Biotin transport and metabolism
Defective HLCS causes multiple carboxylase deficiency
Propionyl-CoA catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001254 Lethargy 
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 HP:0001259 Coma 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001638 Cardiomyopathy 
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 HP:0001733 Pancreatitis 
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001876 Pancytopenia 
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 HP:0001903 Anemia 
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 HP:0001942 Metabolic acidosis 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0001944 Dehydration 
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 HP:0001987 Hyperammonemia 
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 HP:0001992 Organic aciduria 
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 HP:0002013 Vomiting 
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 HP:0002019 Constipation 
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 HP:0002059 Cerebral atrophy 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002154 Hyperglycinemia 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002509 Limb hypertonia 
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 HP:0002789 Tachypnea 
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 HP:0003108 Hyperglycinuria 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003353 Propionyl-CoA carboxylase deficiency 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004396 Poor appetite 
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 HP:0006846 Acute encephalopathy 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
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 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
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 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
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 HP:0011695 Cerebellar hemorrhage "`Hemorrhage` (MPATH:119) into the parenchyma of the cerebellum." [HPO:probinson]
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 HP:0410066 Increased level of hippuric acid in urine "An increase in the level of hippuric acid in the urine." [PMID:19551947, PMID:22626821]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000114054 PCCB / P05166 / propionyl-CoA carboxylase beta subunit  / complex
 ENSG00000159267 HLCS / P50747 / holocarboxylase synthetase  / reaction
 ENSG00000175198 PCCA / P05165 / propionyl-CoA carboxylase alpha subunit  / complex






 

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