ENSG00000114054


Homo sapiens

Features
Gene ID: ENSG00000114054
  
Biological name :PCCB
  
Synonyms : P05166 / PCCB / propionyl-CoA carboxylase beta subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q22.3
Gene start: 136250306
Gene end: 136337896
  
Corresponding Affymetrix probe sets: 1557502_at (Human Genome U133 Plus 2.0 Array)   212694_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000417549
Ensembl peptide - ENSP00000417937
Ensembl peptide - ENSP00000420759
Ensembl peptide - ENSP00000420639
Ensembl peptide - ENSP00000420391
Ensembl peptide - ENSP00000420158
Ensembl peptide - ENSP00000419563
Ensembl peptide - ENSP00000419293
Ensembl peptide - ENSP00000419263
Ensembl peptide - ENSP00000419129
Ensembl peptide - ENSP00000419027
Ensembl peptide - ENSP00000418307
Ensembl peptide - ENSP00000418020
Ensembl peptide - ENSP00000251654
Ensembl peptide - ENSP00000417253
NCBI entrez gene - 5096     See in Manteia.
OMIM - 232050
RefSeq - NM_001178014
RefSeq - NM_000532
RefSeq - XM_011512873
RefSeq Peptide - NP_000523
RefSeq Peptide - NP_001171485
swissprot - E7ETT1
swissprot - E7ENC1
swissprot - C9JVY9
swissprot - C9JVW9
swissprot - E9PEC3
swissprot - C9JAW3
swissprot - F8WBI9
swissprot - H7C5C9
swissprot - P05166
swissprot - C9JQS9
swissprot - E9PDR0
swissprot - E7EX59
swissprot - E7EUY3
swissprot - E7ETT4
Ensembl - ENSG00000114054
  
Related genetic diseases (OMIM): 606054 - Propionicacidemia, 606054
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pccbENSDARG00000038910Danio rerio
 PCCBENSGALG00000037238Gallus gallus
 PccbENSMUSG00000032527Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MCCC2 / Q9HCC0 / methylcrotonoyl-CoA carboxylase 2ENSG0000013184429


Protein motifs (from Interpro)
Interpro ID Name
 IPR000438  Acetyl-CoA carboxylase carboxyl transferase, beta subunit
 IPR011762  Acetyl-coenzyme A carboxyltransferase, N-terminal
 IPR011763  Acetyl-coenzyme A carboxyltransferase, C-terminal
 IPR029045  ClpP/crotonase-like domain superfamily
 IPR034733  Acetyl-CoA carboxylase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006633 fatty acid biosynthetic process IEA
 biological_processGO:0006768 biotin metabolic process TAS
 biological_processGO:0009062 fatty acid catabolic process IBA
 biological_processGO:0019626 short-chain fatty acid catabolic process TAS
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0009317 acetyl-CoA carboxylase complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003989 acetyl-CoA carboxylase activity IEA
 molecular_functionGO:0004658 propionyl-CoA carboxylase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016421 CoA carboxylase activity IBA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
Biotin transport and metabolism
Defective HLCS causes multiple carboxylase deficiency
Propionyl-CoA catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
Show

 HP:0000964 Eczema "Eczema is a form of dermatitis. The term eczema is broadly applied to a range of persistent skin conditions and can be related to a number of underlying conditions. Manifestations of eczema can include dryness and recurring skin rashes with redness, skin edema, itching and dryness, crusting, flaking, blistering, cracking, oozing, or bleeding." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001254 Lethargy 
Show

 HP:0001259 Coma 
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001638 Cardiomyopathy 
Show

 HP:0001733 Pancreatitis 
Show

 HP:0001873 Thrombocytopenia 
Show

 HP:0001875 Neutropenia 
Show

 HP:0001876 Pancytopenia 
Show

 HP:0001903 Anemia 
Show

 HP:0001942 Metabolic acidosis 
Show

 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
Show

 HP:0001944 Dehydration 
Show

 HP:0001987 Hyperammonemia 
Show

 HP:0001992 Organic aciduria 
Show

 HP:0002013 Vomiting 
Show

 HP:0002019 Constipation 
Show

 HP:0002059 Cerebral atrophy 
Show

 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
Show

 HP:0002154 Hyperglycinemia 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002509 Limb hypertonia 
Show

 HP:0002789 Tachypnea 
Show

 HP:0003108 Hyperglycinuria 
Show

 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
Show

 HP:0003353 Propionyl-CoA carboxylase deficiency 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004396 Poor appetite 
Show

 HP:0006846 Acute encephalopathy 
Show

 HP:0008872 Feeding problems in infancy 
Show

 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
Show

 HP:0010978 Abnormality of immune system physiology "A functional abnormality of the `immune system` (FMA:9825)." [HPO:probinson, MP:0001790]
Show

 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
Show

 HP:0011695 Cerebellar hemorrhage "`Hemorrhage` (MPATH:119) into the parenchyma of the cerebellum." [HPO:probinson]
Show

 HP:0410066 Increased level of hippuric acid in urine "An increase in the level of hippuric acid in the urine." [PMID:19551947, PMID:22626821]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000175198 PCCA / P05165 / propionyl-CoA carboxylase alpha subunit  / complex
 ENSG00000114054 PCCB / P05166 / propionyl-CoA carboxylase beta subunit  / complex
 ENSG00000159267 HLCS / P50747 / holocarboxylase synthetase  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr