ENSG00000159267


Homo sapiens

Features
Gene ID: ENSG00000159267
  
Biological name :HLCS
  
Synonyms : HLCS / holocarboxylase synthetase / P50747
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: -1
Band: q22.13
Gene start: 36750888
Gene end: 36990236
  
Corresponding Affymetrix probe sets: 207833_s_at (Human Genome U133 Plus 2.0 Array)   209399_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000392923
Ensembl peptide - ENSP00000382071
Ensembl peptide - ENSP00000396370
Ensembl peptide - ENSP00000479939
Ensembl peptide - ENSP00000396443
Ensembl peptide - ENSP00000338387
NCBI entrez gene - 3141     See in Manteia.
OMIM - 609018
RefSeq - XM_017028330
RefSeq - NM_000411
RefSeq - NM_001242784
RefSeq - NM_001242785
RefSeq - XM_005260953
RefSeq - XM_005260955
RefSeq - XM_005260956
RefSeq - XM_006723994
RefSeq - XM_006723995
RefSeq - XM_011529538
RefSeq - XM_011529539
RefSeq - XM_011529541
RefSeq Peptide - NP_001339446
RefSeq Peptide - NP_001229713
RefSeq Peptide - NP_001229714
RefSeq Peptide - NP_001339444
RefSeq Peptide - NP_001339445
RefSeq Peptide - NP_001339447
RefSeq Peptide - NP_000402
swissprot - C9JCQ9
swissprot - C9JD75
swissprot - P50747
swissprot - A0A0C4DG27
Ensembl - ENSG00000159267
  
Related genetic diseases (OMIM): 253270 - Holocarboxylase synthetase deficiency, 253270
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hlcsENSDARG00000039934Danio rerio
 HLCSENSGALG00000016047Gallus gallus
 HlcsENSMUSG00000040820Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003142  Biotin protein ligase, C-terminal
 IPR004143  Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain
 IPR004408  Biotin--acetyl-CoA-carboxylase ligase
 IPR019197  Biotin-protein ligase, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006464 cellular protein modification process IEA
 biological_processGO:0006768 biotin metabolic process TAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0009305 protein biotinylation IDA
 biological_processGO:0016570 histone modification IDA
 biological_processGO:0070781 response to biotin IDA
 biological_processGO:0071110 histone biotinylation IDA
 cellular_componentGO:0000785 chromatin IDA
 cellular_componentGO:0005652 nuclear lamina IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016363 nuclear matrix IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity IEA
 molecular_functionGO:0004078 biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity IEA
 molecular_functionGO:0004079 biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity IEA
 molecular_functionGO:0004080 biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0009374 biotin binding IDA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0018271 biotin-protein ligase activity TAS
 molecular_functionGO:0019899 enzyme binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
Biotin transport and metabolism
Defective HLCS causes multiple carboxylase deficiency


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000988 Skin rash 
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 HP:0001096 Keratoconjunctivitis "Inflammation of the cornea and conjunctiva." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001259 Coma 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001510 Growth retardation 
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 HP:0001596 Alopecia "Loss of hair from the head or body." [HPO:curators]
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 HP:0001824 Weight loss 
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 HP:0001873 Thrombocytopenia 
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 HP:0001942 Metabolic acidosis 
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 HP:0001987 Hyperammonemia 
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 HP:0001992 Organic aciduria 
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 HP:0002013 Vomiting 
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 HP:0002017 Nausea and vomiting 
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 HP:0002039 Anorexia 
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 HP:0002098 Respiratory distress 
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 HP:0002789 Tachypnea 
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 HP:0002883 Hyperventilation 
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 HP:0007549 Desquamation of skin soon after birth 
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 HP:0008872 Feeding problems in infancy 
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 HP:0011127 Perioral eczema "A type of `eczema` (HP:0000964) that occurs in the lips and perioral area." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000078070 MCCC1 / Q96RQ3 / methylcrotonoyl-CoA carboxylase 1  / reaction
 ENSG00000114054 PCCB / P05166 / propionyl-CoA carboxylase beta subunit  / reaction
 ENSG00000175198 PCCA / P05165 / propionyl-CoA carboxylase alpha subunit  / reaction
 ENSG00000131844 MCCC2 / Q9HCC0 / methylcrotonoyl-CoA carboxylase 2  / reaction
 ENSG00000076555 ACACB / O00763 / acetyl-CoA carboxylase beta  / reaction
 ENSG00000173599 PC / P11498 / pyruvate carboxylase  / reaction
 ENSG00000278540 ACACA / Q13085 / acetyl-CoA carboxylase alpha  / reaction






 

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