ENSG00000078070


Homo sapiens

Features
Gene ID: ENSG00000078070
  
Biological name :MCCC1
  
Synonyms : MCCC1 / methylcrotonoyl-CoA carboxylase 1 / Q96RQ3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: q27.1
Gene start: 183015218
Gene end: 183116075
  
Corresponding Affymetrix probe sets: 218440_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000420433
Ensembl peptide - ENSP00000486824
Ensembl peptide - ENSP00000480435
Ensembl peptide - ENSP00000420648
Ensembl peptide - ENSP00000420591
Ensembl peptide - ENSP00000265594
Ensembl peptide - ENSP00000418979
Ensembl peptide - ENSP00000419328
Ensembl peptide - ENSP00000419658
Ensembl peptide - ENSP00000419898
Ensembl peptide - ENSP00000420088
Ensembl peptide - ENSP00000420223
NCBI entrez gene - 56922     See in Manteia.
OMIM - 609010
RefSeq - XM_017006875
RefSeq - NM_001293273
RefSeq - NM_020166
RefSeq - XM_006713702
RefSeq - XM_011512992
RefSeq - XM_011512993
RefSeq - XM_017006874
RefSeq Peptide - NP_001280202
RefSeq Peptide - NP_064551
swissprot - Q96RQ3
swissprot - E9PHF7
swissprot - A0A0S2Z693
swissprot - E9PG35
swissprot - F2Z2Z7
swissprot - F2Z3E2
swissprot - F5GYT8
swissprot - F8WF46
swissprot - F8WDI3
swissprot - G5E9X5
Ensembl - ENSG00000078070
  
Related genetic diseases (OMIM): 210200 - 3-Methylcrotonyl-CoA carboxylase 1 deficiency, 210200
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mccc1ENSDARG00000102538Danio rerio
 MCCC1ENSGALG00000008785Gallus gallus
 Mccc1ENSMUSG00000027709Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCCA / P05165 / propionyl-CoA carboxylase alpha subunitENSG0000017519837
Q96GG9 / DCUN1D1 / defective in cullin neddylation 1 domain containing 1ENSG000000430936


Protein motifs (from Interpro)
Interpro ID Name
 IPR000089  Biotin/lipoyl attachment
 IPR001882  Biotin-binding site
 IPR005479  Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
 IPR005481  Biotin carboxylase-like, N-terminal domain
 IPR005482  Biotin carboxylase, C-terminal
 IPR011053  Single hybrid motif
 IPR011054  Rudiment single hybrid motif
 IPR011761  ATP-grasp fold
 IPR011764  Biotin carboxylation domain
 IPR013815  ATP-grasp fold, subdomain 1
 IPR016185  Pre-ATP-grasp domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006552 leucine catabolic process ISS
 biological_processGO:0006768 biotin metabolic process NAS
 biological_processGO:0009083 branched-chain amino acid catabolic process TAS
 biological_processGO:0051291 protein heterooligomerization NAS
 cellular_componentGO:0002169 3-methylcrotonyl-CoA carboxylase complex, mitochondrial TAS
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005759 mitochondrial matrix IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:1905202 methylcrotonoyl-CoA carboxylase complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004075 biotin carboxylase activity IEA
 molecular_functionGO:0004485 methylcrotonoyl-CoA carboxylase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0009374 biotin binding NAS
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Biotin transport and metabolism
Defective HLCS causes multiple carboxylase deficiency
Branched-chain amino acid catabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001259 Coma 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001425 Heterogeneous 
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 HP:0001508 Failure to thrive 
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 HP:0001531 Failure to thrive in infancy 
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0001987 Hyperammonemia 
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 HP:0001992 Organic aciduria 
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 HP:0002013 Vomiting 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002179 Opisthotonus 
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 HP:0002919 Ketonuria 
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 HP:0003812 Phenotypic variability 
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 HP:0004357 Abnormality of leucine metabolism 
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 HP:0004911 metabolic acidosis, episodic 
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 HP:0006573 Macro- and microvesicular steatosis, acute 
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 HP:0008281 Hyperammonemia, acute 
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 HP:0008872 Feeding problems in infancy 
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 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
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 HP:0100659 Abnormality of the cerebral vasculature 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000078070 MCCC1 / Q96RQ3 / methylcrotonoyl-CoA carboxylase 1  / complex
 ENSG00000159267 HLCS / P50747 / holocarboxylase synthetase  / reaction
 ENSG00000131844 MCCC2 / Q9HCC0 / methylcrotonoyl-CoA carboxylase 2  / complex






 

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contact: otassy@igbmc.fr