ENSG00000173599


Homo sapiens

Features
Gene ID: ENSG00000173599
  
Biological name :PC
  
Synonyms : P11498 / PC / pyruvate carboxylase
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q13.2
Gene start: 66848233
Gene end: 66958376
  
Corresponding Affymetrix probe sets: 204476_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000377532
Ensembl peptide - ENSP00000377530
Ensembl peptide - ENSP00000434192
Ensembl peptide - ENSP00000486373
Ensembl peptide - ENSP00000435905
Ensembl peptide - ENSP00000377527
NCBI entrez gene - 5091     See in Manteia.
OMIM - 608786
RefSeq - XM_017017872
RefSeq - XM_005274032
RefSeq - XM_006718578
RefSeq - XM_011545086
RefSeq - XM_017017868
RefSeq - XM_017017869
RefSeq - XM_017017870
RefSeq - XM_017017871
RefSeq - NM_000920
RefSeq - NM_001040716
RefSeq - NM_022172
RefSeq - XM_005274031
RefSeq Peptide - NP_071504
RefSeq Peptide - NP_000911
RefSeq Peptide - NP_001035806
swissprot - A0A024R5C5
swissprot - P11498
swissprot - E9PRE7
swissprot - E9PS68
Ensembl - ENSG00000173599
  
Related genetic diseases (OMIM): 266150 - Pyruvate carboxylase deficiency, 266150
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcxaENSDARG00000098766Danio rerio
 pcxbENSDARG00000051939Danio rerio
 PcxENSMUSG00000024892Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000089  Biotin/lipoyl attachment
 IPR000891  Pyruvate carboxyltransferase
 IPR001882  Biotin-binding site
 IPR003379  Carboxylase, conserved domain
 IPR005479  Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
 IPR005481  Biotin carboxylase-like, N-terminal domain
 IPR005482  Biotin carboxylase, C-terminal
 IPR005930  Pyruvate carboxylase
 IPR011053  Single hybrid motif
 IPR011054  Rudiment single hybrid motif
 IPR011761  ATP-grasp fold
 IPR011764  Biotin carboxylation domain
 IPR013785  Aldolase-type TIM barrel
 IPR013815  ATP-grasp fold, subdomain 1
 IPR016185  Pre-ATP-grasp domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006090 pyruvate metabolic process IEA
 biological_processGO:0006094 gluconeogenesis TAS
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0006768 biotin metabolic process TAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0010629 negative regulation of gene expression IMP
 biological_processGO:0019074 viral RNA genome packaging IMP
 biological_processGO:0044791 positive regulation by host of viral release from host cell IMP
 biological_processGO:0044794 positive regulation by host of viral process IMP
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004075 biotin carboxylase activity IEA
 molecular_functionGO:0004736 pyruvate carboxylase activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0009374 biotin binding TAS
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Biotin transport and metabolism
Defective HLCS causes multiple carboxylase deficiency
Gluconeogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001943 Hypoglycemia "A lower than normal level of blood glucose." [HPO:curators]
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 HP:0002049 Proximal renal tubular acidosis 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002169 Clonus 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003348 Hyperalaninemia 
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 HP:0003542 Increased serum pyruvate "An abnormal increase in the concentration of pyruvate in the blood. Pyruvate is involved in energy metabolism, forming part of glycolysis and the citric acid cycle." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0006970 Periventricular leukomalacia 
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 HP:0007190 Neuronal loss in the cerebral cortex 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000159267 HLCS / P50747 / holocarboxylase synthetase  / reaction
 ENSG00000173599 PC / P11498 / pyruvate carboxylase  / complex






 

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