ENSDARG00000029388


Danio rerio

Features
Gene ID: ENSDARG00000029388
  
Biological name :si:dkey-90m5.4
  
Synonyms : si:dkey-90m5.4
  
Possible biological names infered from orthology : leucine rich alpha-2-glycoprotein 1 / LRG1 / P02750
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 23440632
Gene end: 23444653
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000042819
Ensembl peptide - ENSDARP00000156419
NCBI entrez gene - 553466     See in Manteia.
RefSeq - XM_681190
swissprot - Q5RHE5
ZFIN ID - ZDB-GENE-041014-250
Ensembl - ENSDARG00000029388
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRG1ENSGALG00000027587Gallus gallus
 LRG1ENSG00000171236Homo sapiens
 Lrg1ENSMUSG00000037095Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
flrt1b / fibronectin leucine rich transmembrane protein 1b / FLRT1* / Q6RKD8* / Q9NZU1* / fibronectin leucine rich transmembrane protein 1* / Leucine-rich repeat transmembrane protein FLRT1 *ENSDARG0000007559725
flrt2 / fibronectin leucine rich transmembrane protein 2 / O43155* / Q8BLU0* / Leucine-rich repeat transmembrane protein FLRT2 *ENSDARG0000007935524
flrt2 / fibronectin leucine rich transmembrane protein 2 / O43155* / Q8BLU0* / Leucine-rich repeat transmembrane protein FLRT2 *ENSDARG0000009729923
flrt3 / fibronectin leucine rich transmembrane 3 / Q8BGT1* / Q9NZU0* / fibronectin leucine rich transmembrane protein 3* / Leucine-rich repeat transmembrane protein FLRT3 *ENSDARG0000007689522
omga / oligodendrocyte myelin glycoprotein a / OMG* / P23515* / oligodendrocyte myelin glycoprotein*ENSDARG0000008657317
omgb / oligodendrocyte myelin glycoprotein b / OMG* / P23515* / oligodendrocyte myelin glycoprotein*ENSDARG0000008944416
si:ch211-191d15.2 / Nepn* / Q9CQ76* / Nephrocan *ENSDARG0000009283416


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005615 extracellular space IBA
 molecular_functionGO:0008201 heparin binding IBA
 molecular_functionGO:0070052 collagen V binding IBA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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