ENSDARG00000029497


Danio rerio

Features
Gene ID: ENSDARG00000029497
  
Biological name :tfcp2l1
  
Synonyms : tfcp2l1 / transcription factor CP2-like 1
  
Possible biological names infered from orthology : Q3UNW5 / Q9NZI6 / Transcription factor CP2-like protein 1
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 38292919
Gene end: 38311750
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000040479
Ensembl peptide - ENSDARP00000118325
NCBI entrez gene - 431761     See in Manteia.
RefSeq - NM_001320372
RefSeq Peptide - NP_001307301
swissprot - F1QR85
swissprot - E9QJE0
ZFIN ID - ZDB-GENE-040704-58
Ensembl - ENSDARG00000029497
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TFCP2L1ENSGALG00000011635Gallus gallus
 Q9NZI6ENSG00000115112Homo sapiens
 Q3UNW5ENSMUSG00000026380Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tfcp2 / transcription factor CP2 / Q12800* / Q9ERA0* / Mus musculus transcription factor CP2 (Tfcp2), transcript variant 3, mRNA.*ENSDARG0000006030664
ubp1 / upstream binding protein 1 / Q811S7* / Q9NZI7*ENSDARG0000001800056
grhl2b / grainyhead-like transcription factor 2b / GRHL2* / Q6ISB3* / Q8K5C0* / Grainyhead-like * / grainyhead like transcription factor 2*ENSDARG0000006197425
grhl1 / grainyhead-like transcription factor 1 / Q921D9* / Q9NZI5* / Grainyhead-like *ENSDARG0000006139125
grhl2a / grainyhead-like transcription factor 2a / GRHL2* / Q6ISB3* / Q8K5C0* / Grainyhead-like * / grainyhead like transcription factor 2*ENSDARG0000005834223
grhl3 / grainyhead-like transcription factor 3 / Q5FWH3* / Q8TE85* / Grainyhead-like *ENSDARG0000007855220


Protein motifs (from Interpro)
Interpro ID Name
 IPR007604  CP2 transcription factor
 IPR013761  Sterile alpha motif/pointed domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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