ENSDARG00000030108


Danio rerio

Features
Gene ID: ENSDARG00000030108
  
Biological name :sec22ba
  
Synonyms : sec22ba / SEC22 homolog B, vesicle trafficking protein a
  
Possible biological names infered from orthology : O08547 / O75396 / SEC22B / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene) / Vesicle-trafficking protein SEC22b
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 9970942
Gene end: 9983661
  
Corresponding Affymetrix probe sets: Dr.8759.1.S1_at (Zebrafish Array)   NM_213384_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000127176
Ensembl peptide - ENSDARP00000127468
Ensembl peptide - ENSDARP00000043498
NCBI entrez gene - 114464     See in Manteia.
RefSeq - NM_213384
RefSeq Peptide - NP_998549
swissprot - A5WV65
swissprot - U3JB46
ZFIN ID - ZDB-GENE-010724-3
Ensembl - ENSDARG00000030108
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q5ZJW4ENSGALG00000039704Gallus gallus
 O75396ENSG00000265808Homo sapiens
 O08547ENSMUSG00000027879Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...ENSDARG0000010043587
sec22a / SEC22 homolog A, vesicle trafficking protein / Q8BH47* / Q96IW7*ENSDARG0000007832830
sec22c / SEC22 homolog C, vesicle trafficking protein / Q8BXT9* / Q9BRL7* / Vesicle-trafficking protein SEC22c *ENSDARG0000006338727


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR010908  Longin domain
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
ER-Phagosome pathway
COPII-mediated vesicle transport
Cargo concentration in the ER
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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