ENSDARG00000063387


Danio rerio

Features
Gene ID: ENSDARG00000063387
  
Biological name :sec22c
  
Synonyms : sec22c / SEC22 homolog C, vesicle trafficking protein
  
Possible biological names infered from orthology : Q8BXT9 / Q9BRL7 / Vesicle-trafficking protein SEC22c
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 20658760
Gene end: 20675426
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000121545
Ensembl peptide - ENSDARP00000149838
NCBI entrez gene - 558856     See in Manteia.
swissprot - E9QFN4
ZFIN ID - ZDB-GENE-060227-2
Ensembl - ENSDARG00000063387
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC22CENSGALG00000005268Gallus gallus
 Q9BRL7ENSG00000093183Homo sapiens
 Q8BXT9ENSMUSG00000061536Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sec22a / SEC22 homolog A, vesicle trafficking protein / Q8BH47* / Q96IW7*ENSDARG0000007832840
sec22ba / SEC22 homolog B, vesicle trafficking protein a / O75396* / SEC22B* / O08547* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*ENSDARG0000003010819
Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...ENSDARG0000010043519


Protein motifs (from Interpro)
Interpro ID Name
 IPR010908  Longin domain
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr