ENSMUSG00000061536


Mus musculus

Features
Gene ID: ENSMUSG00000061536
  
Biological name :Sec22c
  
Synonyms : Q8BXT9 / Sec22c / Vesicle-trafficking protein SEC22c
  
Possible biological names infered from orthology : Q9BRL7 / SEC22 homolog C, vesicle trafficking protein
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F4
Gene start: 121680045
Gene end: 121705490
  
Corresponding Affymetrix probe sets: 10597833 (MoGene1.0st)   1436102_at (Mouse Genome 430 2.0 Array)   1456091_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000149594
Ensembl peptide - ENSMUSP00000107185
Ensembl peptide - ENSMUSP00000114270
Ensembl peptide - ENSMUSP00000123170
Ensembl peptide - ENSMUSP00000077628
NCBI entrez gene - 215474     See in Manteia.
MGI - MGI:2447871
RefSeq - XM_017313274
RefSeq - NM_001164562
RefSeq - NM_178677
RefSeq - XM_006512042
RefSeq - XM_006512043
RefSeq - XM_006512044
RefSeq - XM_006512045
RefSeq Peptide - NP_001158034
RefSeq Peptide - NP_848792
swissprot - D6RE35
swissprot - D3Z110
swissprot - Q8BXT9
swissprot - A0A1L1SRR6
Ensembl - ENSMUSG00000061536
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sec22cENSDARG00000063387Danio rerio
 SEC22CENSGALG00000005268Gallus gallus
 Q9BRL7ENSG00000093183Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BH47 / Sec22a / SEC22 homolog A, vesicle trafficking protein / Q96IW7*ENSMUSG0000003447341
O08547 / Sec22b / Vesicle-trafficking protein SEC22b / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*ENSMUSG0000002787918


Protein motifs (from Interpro)
Interpro ID Name
 IPR010908  Longin domain
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048280 vesicle fusion with Golgi apparatus IBA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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