ENSDARG00000078328


Danio rerio

Features
Gene ID: ENSDARG00000078328
  
Biological name :sec22a
  
Synonyms : sec22a / SEC22 homolog A, vesicle trafficking protein
  
Possible biological names infered from orthology : Q8BH47 / Q96IW7
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 37850360
Gene end: 37862563
  
Corresponding Affymetrix probe sets: Dr.18740.1.S1_at (Zebrafish Array)   NM_199698_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000148147
Ensembl peptide - ENSDARP00000118013
Ensembl peptide - ENSDARP00000076602
NCBI entrez gene - 324832     See in Manteia.
RefSeq - NM_199698
RefSeq - XM_021478609
RefSeq Peptide - NP_955992
swissprot - F1QC92
swissprot - F1QBW3
ZFIN ID - ZDB-GENE-030131-3553
Ensembl - ENSDARG00000078328
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC22AENSGALG00000011697Gallus gallus
 Q96IW7ENSG00000121542Homo sapiens
 Q8BH47ENSMUSG00000034473Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sec22c / SEC22 homolog C, vesicle trafficking protein / Q8BXT9* / Q9BRL7* / Vesicle-trafficking protein SEC22c *ENSDARG0000006338740
Q7SXP0 / sec22bb / SEC22 homolog B, vesicle trafficking protein b / SEC22B* / O08547* / O75396* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/p...ENSDARG0000010043521
sec22ba / SEC22 homolog B, vesicle trafficking protein a / O75396* / SEC22B* / O08547* / Vesicle-trafficking protein SEC22b * / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*ENSDARG0000003010821


Protein motifs (from Interpro)
Interpro ID Name
 IPR010908  Longin domain
 IPR011012  Longin-like domain superfamily
 IPR027152  Vesicle-trafficking protein Sec22a


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0048280 vesicle fusion with Golgi apparatus IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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