ENSDARG00000032242


Danio rerio

Features
Gene ID: ENSDARG00000032242
  
Biological name :tnnt2c
  
Synonyms : tnnt2c / troponin T2c, cardiac
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 12031958
Gene end: 12033866
  
Corresponding Affymetrix probe sets: Dr.24309.1.S1_at (Zebrafish Array)   NM_181499_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000044153
NCBI entrez gene - 353248     See in Manteia.
RefSeq - NM_181499
RefSeq Peptide - NP_852476
swissprot - Q8AVB1
ZFIN ID - ZDB-GENE-030520-1
Ensembl - ENSDARG00000032242
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnnt2e / troponin T2e, cardiacENSDARG0000004582251
tnnt2a / troponin T type 2a (cardiac)ENSDARG0000002061051
tnnt3b / troponin T type 3b (skeletal, fast) / TNNT3* / P45378* / troponin T3, skeletal, fast* / troponin T3, fast skeletal type*ENSDARG0000006845750
tnnt2b / troponin T type 2b (cardiac)ENSDARG0000010069446
tnnt3a / troponin T type 3a (skeletal, fast) / TNNT3* / P45378* / troponin T3, skeletal, fast* / troponin T3, fast skeletal type*ENSDARG0000003027044
tnnt1 / troponin T type 1 (skeletal, slow) / P13805* / O88346* / troponin T1, skeletal, slow* / troponin T1, slow skeletal type*ENSDARG0000003795443
tnnt2d / troponin T2d, cardiacENSDARG0000000298843


Protein motifs (from Interpro)
Interpro ID Name
 IPR001978  Troponin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006937 regulation of muscle contraction IEA
 biological_processGO:0045214 sarcomere organization IGI
 cellular_componentGO:0005861 troponin complex IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism immobile , abnormal
Show

 ZFA:0009114 muscle cell muscle cell myofibril absent , abnormal
Show

 ZFA:0009116 slow muscle cell slow muscle cell myofibril decreased thickness , abnormal
slow muscle cell sarcomere absent , abnormal
slow muscle cell filamentous actin dispersed , abnormal
slow muscle cell myofibril undulate , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr