ENSDARG00000030270


Danio rerio

Features
Gene ID: ENSDARG00000030270
  
Biological name :tnnt3a
  
Synonyms : tnnt3a / troponin T type 3a (skeletal, fast)
  
Possible biological names infered from orthology : P45378 / TNNT3 / troponin T3, fast skeletal type / troponin T3, skeletal, fast
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 31405266
Gene end: 31418457
  
Corresponding Affymetrix probe sets: Dr.10335.1.S1_at (Zebrafish Array)   NM_131565_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094172
NCBI entrez gene - 58084     See in Manteia.
RefSeq - XM_005163151
RefSeq - NM_131565
RefSeq Peptide - NP_571640
swissprot - Q9I8U9
ZFIN ID - ZDB-GENE-000322-3
Ensembl - ENSDARG00000030270
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TNNT3ENSGALG00000006572Gallus gallus
 TNNT3ENSG00000130595Homo sapiens
 Tnnt3ENSMUSG00000061723Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tnnt3b / troponin T type 3b (skeletal, fast) / TNNT3* / P45378* / troponin T3, skeletal, fast* / troponin T3, fast skeletal type*ENSDARG0000006845785
tnnt2e / troponin T2e, cardiacENSDARG0000004582257
tnnt2c / troponin T2c, cardiacENSDARG0000003224256
tnnt2d / troponin T2d, cardiacENSDARG0000000298856
tnnt2a / troponin T type 2a (cardiac)ENSDARG0000002061055
tnnt1 / troponin T type 1 (skeletal, slow) / P13805* / O88346* / troponin T1, skeletal, slow* / troponin T1, slow skeletal type*ENSDARG0000003795453
tnnt2b / troponin T type 2b (cardiac)ENSDARG0000010069451


Protein motifs (from Interpro)
Interpro ID Name
 IPR001978  Troponin
 IPR027707  Troponin T
 IPR027708  Troponin T, fast skeletal muscle


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006937 regulation of muscle contraction IEA
 biological_processGO:0030239 myofibril assembly IMP
 biological_processGO:0045214 sarcomere organization IMP
 cellular_componentGO:0005861 troponin complex IEA


Pathways (from Reactome)
Pathway description
Striated Muscle Contraction


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001115 trunk trunk muscle refractivity , abnormal
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 ZFA:0005277 skeletal muscle skeletal muscle sarcomere disorganized , abnormal
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 ZFA:0009117 fast muscle cell fast muscle cell actin filament disorganized , abnormal
fast muscle cell actin filament distributed , abnormal
fast muscle cell myofibril degenerate , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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