ENSDARG00000036175


Danio rerio

Features
Gene ID: ENSDARG00000036175
  
Biological name :pcdh1b
  
Synonyms : pcdh1b / protocadherin 1b
  
Possible biological names infered from orthology : PCDH1 / protocadherin 1 / Q08174
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 37545341
Gene end: 37831941
  
Corresponding Affymetrix probe sets: Dr.26174.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000096365
Ensembl peptide - ENSDARP00000142528
NCBI entrez gene - 572016     See in Manteia.
RefSeq - XM_695671
swissprot - E7F376
swissprot - A0A140LGZ8
ZFIN ID - ZDB-GENE-091015-2
Ensembl - ENSDARG00000036175
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCDH1ENSGALG00000002553Gallus gallus
 PCDH1ENSG00000156453Homo sapiens
 Pcdh1ENSMUSG00000051375Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh1a / protocadherin 1a / PCDH1* / Q08174* / protocadherin 1*ENSDARG0000006272074
pcdh7b / protocadherin 7b / PCDH7* / O60245* / protocadherin 7*ENSDARG0000006061051
pcdh7a / protocadherin 7aENSDARG0000007889848
pcdh11 / protocadherin 11 / Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*ENSDARG0000009865237
pcdh9 / protocadherin 9 / Q9HC56*ENSDARG0000006326436
pcdh10b / protocadherin 10bENSDARG0000010282425
pcdh20 / protocadherin 20ENSDARG0000010191025
pcdh20 / protocadherin 20 / Q8N6Y1* / AL592490.1*ENSDARG0000003642425
pcdh2ab3 / protocadherin 2 alpha b 3 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000010271924
pcdh2aa15 / protocadherin 2 alpha a 15 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* ...ENSDARG0000008813623
pcdh2ab1 / pcdh2ab8 / protocadherin 2 alpha b 8 / PCDHA3* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* /...ENSDARG0000008987423
pcdh2aa1 / protocadherin 2 alpha a 1 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000003769523
pcdh2ab2 / protocadherin 2 alpha b2 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q...ENSDARG0000003769123
pcdh1a3 / pcdh1a6 / protocadherin 1 alpha 3 / PCDHA3* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y...ENSDARG0000010459823
pcdh2ab2 / protocadherin 2 alpha b2 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q...ENSDARG0000009946823
pcdh1a3 / protocadherin 1 alpha 3 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y...ENSDARG0000010360223
BX957322.3ENSDARG0000010735323
si:dkeyp-115d7.2 / PCDHA1* / PCDHA5* / O88689* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y5H9* / Q9Y5I0* / ...ENSDARG0000008929722
pcdh2ab1 / protocadherin 2 alpha b 1 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000007190422
pcdh1g9 / protocadherin 1 gamma 9 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y...ENSDARG0000005751922


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR013585  Protocadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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