ENSGALG00000002553


Gallus gallus

Features
Gene ID: ENSGALG00000002553
  
Biological name :PCDH1
  
Synonyms : PCDH1 / protocadherin-1 precursor
  
Possible biological names infered from orthology : protocadherin 1 / Q08174
  
Species: Gallus gallus
  
Chr. number: 13
Strand: 1
Band:
Gene start: 2037709
Gene end: 2061000
  
Corresponding Affymetrix probe sets: Gga.19646.1.S1_at (Chicken Array)   Gga.8023.1.S1_at (Chicken Array)   GgaAffx.20102.1.S1_s_at (Chicken Array)   GgaAffx.25535.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000040446
NCBI entrez gene - 416194     See in Manteia.
RefSeq - NM_001045827
RefSeq - XM_015293599
RefSeq - XM_015293600
RefSeq Peptide - NP_001039292
swissprot - F6V7J1
Ensembl - ENSGALG00000002553
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1aENSDARG00000062720Danio rerio
 pcdh1bENSDARG00000036175Danio rerio
 PCDH1ENSG00000156453Homo sapiens
 Pcdh1ENSMUSG00000051375Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH7 / protocadherin 7 / O60245*ENSGALG0000003388338
Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*ENSGALG0000000685137
PCDH9 / protocadherin 9 / Q9HC56*ENSGALG0000001690836
PCDH20* / Q8BIZ0* / Q8N6Y1* / AL592490.1* / protocadherin 20*ENSGALG0000001693426
PCDH10ENSGALG0000000971925
ENSGALG0000004260622
PCDHA2 / Gallus gallus protocadherin alpha 12 (PCDHA12), mRNA. / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5...ENSGALG0000004314222
PCDH15 / Q0ZM14 / Protocadherin-15 / Q99PJ1* / Q96QU1* / protocadherin related 15*ENSGALG0000000274420
ENSGALG000000239348
Pcdhgc3* / protocadherin gamma subfamily C, 3*ENSGALG000000366296


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR013585  Protocadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr