ENSGALG00000042606


Gallus gallus

Features
Gene ID: ENSGALG00000042606
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 890220
Gene end: 894388
  
Corresponding Affymetrix probe sets: Gga.18216.1.S1_at (Chicken Array)   GgaAffx.483.4.S1_at (Chicken Array)   GgaAffx.483.6.S1_at (Chicken Array)   GgaAffx.483.7.S1_at (Chicken Array)   GgaAffx.483.8.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053806
NCBI entrez gene - 768760     See in Manteia.
RefSeq - XM_001231878
swissprot - B0Z662
Ensembl - ENSGALG00000042606
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX957322.3ENSDARG00000107353Danio rerio
 si:ch73-233f7.8ENSDARG00000100424Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH10ENSGALG0000000971943
PCDHA2 / Gallus gallus protocadherin alpha 12 (PCDHA12), mRNA. / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5...ENSGALG0000004314236
Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*ENSGALG0000000685127
PCDH1 / protocadherin-1 precursor / Q08174* / protocadherin 1*ENSGALG0000000255326
PCDH9 / protocadherin 9 / Q9HC56*ENSGALG0000001690825
PCDH15 / Q0ZM14 / Protocadherin-15 / Q99PJ1* / Q96QU1* / protocadherin related 15*ENSGALG0000000274422
PCDH20* / Q8BIZ0* / Q8N6Y1* / AL592490.1* / protocadherin 20*ENSGALG0000001693422
PCDH7 / protocadherin 7 / O60245*ENSGALG0000003388317
Pcdhgc3* / protocadherin gamma subfamily C, 3*ENSGALG0000003662914
ENSGALG0000002393410


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030723  Protocadherin beta-1
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr