ENSGALG00000002744


Gallus gallus

Features
Gene ID: ENSGALG00000002744
  
Biological name :PCDH15
  
Synonyms : PCDH15 / Protocadherin-15 / Q0ZM14
  
Possible biological names infered from orthology : protocadherin related 15 / Q96QU1 / Q99PJ1
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 6330204
Gene end: 6628545
  
Corresponding Affymetrix probe sets: GgaAffx.1788.1.S1_at (Chicken Array)   GgaAffx.1788.2.S1_s_at (Chicken Array)   GgaAffx.1789.1.S1_at (Chicken Array)   GgaAffx.1791.1.S1_at (Chicken Array)   GgaAffx.1798.1.S1_at (Chicken Array)   GgaAffx.1799.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060369
Ensembl peptide - ENSGALP00000060700
Ensembl peptide - ENSGALP00000004315
Ensembl peptide - ENSGALP00000040727
Ensembl peptide - ENSGALP00000058882
Ensembl peptide - ENSGALP00000059376
Ensembl peptide - ENSGALP00000059801
NCBI entrez gene - 423644     See in Manteia.
RefSeq - XM_015288088
RefSeq - NM_001044654
RefSeq - XM_015288083
RefSeq - XM_015288084
RefSeq - XM_015288086
RefSeq - XM_015288087
RefSeq - XM_015288077
RefSeq - XM_015288078
RefSeq - XM_015288079
RefSeq - XM_015288080
RefSeq - XM_015288081
RefSeq - XM_015288082
RefSeq Peptide - NP_001038119
swissprot - Q0ZM14
swissprot - R4GFD8
swissprot - A0A1L1RNM5
Ensembl - ENSGALG00000002744
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh15aENSDARG00000098257Danio rerio
 pcdh15bENSDARG00000008127Danio rerio
 PCDH15ENSG00000150275Homo sapiens
 Pcdh15ENSMUSG00000052613Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH1 / protocadherin-1 precursor / Q08174* / protocadherin 1*ENSGALG0000000255311
Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*ENSGALG0000000685111
PCDH9 / protocadherin 9 / Q9HC56*ENSGALG0000001690811
ENSGALG0000004260610
PCDH10ENSGALG0000000971910
PCDHA2 / Gallus gallus protocadherin alpha 12 (PCDHA12), mRNA. / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5...ENSGALG0000004314210
PCDH20* / Q8BIZ0* / Q8N6Y1* / AL592490.1* / protocadherin 20*ENSGALG000000169349
PCDH7 / protocadherin 7 / O60245*ENSGALG000000338837
ENSGALG000000239345
Pcdhgc3* / protocadherin gamma subfamily C, 3*ENSGALG000000366293


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030718  Protocadherin-15


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001964 startle response IEA
 biological_processGO:0002009 morphogenesis of an epithelium IEA
 biological_processGO:0007015 actin filament organization IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0042491 inner ear auditory receptor cell differentiation IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0050910 detection of mechanical stimulus involved in sensory perception of sound IEA
 biological_processGO:0050973 detection of mechanical stimulus involved in equilibrioception IEA
 biological_processGO:0051017 actin filament bundle assembly IEA
 biological_processGO:0060013 righting reflex IEA
 biological_processGO:0060088 auditory receptor cell stereocilium organization IEA
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 cellular_componentGO:0001750 photoreceptor outer segment IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032420 stereocilium IEA
 cellular_componentGO:0032421 stereocilium bundle IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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