Manteia

ENSDARG00000098257

Danio rerio

Features

Gene ID:	ENSDARG00000098257

Biological name :	pcdh15a

Synonyms :	pcdh15a / protocadherin-related 15a

Possible biological names infered from orthology :	PCDH15 / Protocadherin-15 / protocadherin related 15 / Q96QU1 / Q99PJ1

Species:	Danio rerio

Chr. number:	13
Strand:	-1
Band:
Gene start:	41125358
Gene end:	41546779

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000130788 Ensembl peptide - ENSDARP00000149410 Ensembl peptide - ENSDARP00000135210 NCBI entrez gene - 368476 See in Manteia. RefSeq - NM_001012482 RefSeq Peptide - NP_001012500 swissprot - A0A1V0D7A1 swissprot - A0A0R4ILG0 swissprot - Q5ICW6 ZFIN ID - ZDB-GENE-030616-3 Ensembl - ENSDARG00000098257

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
PCDH15	ENSGALG00000002744	Gallus gallus
PCDH15	ENSG00000150275	Homo sapiens
Pcdh15	ENSMUSG00000052613	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
pcdh15b / protocadherin-related 15b / Q99PJ1* / PCDH15* / Q96QU1* / Protocadherin-15 * / protocadherin related 15*	ENSDARG00000008127	65
pcdh11 / protocadherin 11 / Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*	ENSDARG00000098652	13
pcdh9 / protocadherin 9 / Q9HC56*	ENSDARG00000063264	13
pcdh7a / protocadherin 7a	ENSDARG00000078898	13
pcdh7b / protocadherin 7b / PCDH7* / O60245* / protocadherin 7*	ENSDARG00000060610	13
pcdh1a / protocadherin 1a / PCDH1* / Q08174* / protocadherin 1*	ENSDARG00000062720	13
pcdh2aa15 / protocadherin 2 alpha a 15 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* ...	ENSDARG00000088136	12
pcdh1b / protocadherin 1b / PCDH1* / Q08174* / protocadherin 1*	ENSDARG00000036175	12
pcdh1a3 / protocadherin 1 alpha 3 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y...	ENSDARG00000103602	11
BX957322.3	ENSDARG00000107353	11
pcdh2aa1 / protocadherin 2 alpha a 1 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...	ENSDARG00000037695	11
pcdh1a3 / pcdh1a6 / protocadherin 1 alpha 3 / PCDHA3* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y...	ENSDARG00000104598	11
pcdh2ab2 / protocadherin 2 alpha b2 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q...	ENSDARG00000037691	11
pcdh10b / protocadherin 10b	ENSDARG00000102824	11
pcdh20 / protocadherin 20 / Q8N6Y1* / AL592490.1*	ENSDARG00000036424	11
pcdh2ab12 / protocadherin 2 alpha b 12 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* ...	ENSDARG00000104080	11
pcdh1g9 / protocadherin 1 gamma 9 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y...	ENSDARG00000057519	11
pcdh2ab2 / protocadherin 2 alpha b2 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q...	ENSDARG00000099468	11
pcdh2ab3 / protocadherin 2 alpha b 3 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...	ENSDARG00000102719	11
pcdh2ab1 / protocadherin 2 alpha b 1 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...	ENSDARG00000071904	11

Protein motifs (from Interpro)

Interpro ID	Name
IPR002126	Cadherin
IPR015919	Cadherin-like
IPR020894	Cadherin conserved site

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0006897	endocytosis	IMP
biological_process	GO:0007155	cell adhesion	IEA
biological_process	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	IEA
biological_process	GO:0007267	cell-cell signaling	IBA
biological_process	GO:0007423	sensory organ development	IMP
biological_process	GO:0035315	hair cell differentiation	IMP
biological_process	GO:0050910	detection of mechanical stimulus involved in sensory perception of sound	IGI
biological_process	GO:0050974	detection of mechanical stimulus involved in sensory perception	IMP
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0005887	integral component of plasma membrane	IBA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0016021	integral component of membrane	ISS
molecular_function	GO:0005509	calcium ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000217	inner ear	inner ear quality , abnormal inner ear morphology , abnormal inner ear stereocilium bundle disorganized , abnormal inner ear stereocilium bundle splayed , abnormal	Show
ZFA:0001094	whole organism	whole organism unbalanced , abnormal whole organism decreased behavioural activity , abnormal whole organism circling , abnormal whole organism decreased amount , abnormal	Show
ZFA:0009366	hair cell	hair cell quality , abnormal hair cell morphology , abnormal hair cell stereocilium bundle direction , abnormal	Show
ZFA:0009367	neuromast hair cell	neuromast hair cell endocytosis decreased process quality , abnormal neuromast hair cell stereocilium bundle decreased amount , abnormal neuromast hair cell cuticular plate mislocalised , abnormal neuromast hair cell intraciliary transport decreased process quality , abnormal neuromast hair cell kinocilium absent , abnormal neuromast hair cell kinocilium decreased length , abnormal neuromast hair cell kinocilium decreased amount , abnormal neuromast hair cell cilium assembly decreased process quality , abnormal neuromast hair cell kinociliary basal body spatial pattern , abnormal neuromast hair cell decreased functionality , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

1 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr