ENSG00000150275


Homo sapiens

Features
Gene ID: ENSG00000150275
  
Biological name :PCDH15
  
Synonyms : PCDH15 / protocadherin related 15 / Q96QU1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q21.1
Gene start: 53802771
Gene end: 55627942
  
Corresponding Affymetrix probe sets: 1553344_at (Human Genome U133 Plus 2.0 Array)   1560330_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000378818
Ensembl peptide - ENSP00000363076
Ensembl peptide - ENSP00000378820
Ensembl peptide - ENSP00000495930
Ensembl peptide - ENSP00000495195
Ensembl peptide - ENSP00000484703
Ensembl peptide - ENSP00000484454
Ensembl peptide - ENSP00000483745
Ensembl peptide - ENSP00000482921
Ensembl peptide - ENSP00000482794
Ensembl peptide - ENSP00000482780
Ensembl peptide - ENSP00000482329
Ensembl peptide - ENSP00000481211
Ensembl peptide - ENSP00000480780
Ensembl peptide - ENSP00000478551
Ensembl peptide - ENSP00000478512
Ensembl peptide - ENSP00000478076
Ensembl peptide - ENSP00000412628
Ensembl peptide - ENSP00000412531
Ensembl peptide - ENSP00000412320
Ensembl peptide - ENSP00000410304
Ensembl peptide - ENSP00000394465
Ensembl peptide - ENSP00000386693
Ensembl peptide - ENSP00000378833
Ensembl peptide - ENSP00000378832
Ensembl peptide - ENSP00000378829
Ensembl peptide - ENSP00000378827
Ensembl peptide - ENSP00000378826
Ensembl peptide - ENSP00000378821
Ensembl peptide - ENSP00000322604
Ensembl peptide - ENSP00000354950
Ensembl peptide - ENSP00000363066
Ensembl peptide - ENSP00000363067
Ensembl peptide - ENSP00000363068
NCBI entrez gene - 65217     See in Manteia.
OMIM - 605514
RefSeq - NM_001354404
RefSeq - NM_001142763
RefSeq - NM_001142764
RefSeq - NM_001142765
RefSeq - NM_001142766
RefSeq - NM_001142767
RefSeq - NM_001142768
RefSeq - NM_001142769
RefSeq - NM_001142770
RefSeq - NM_001142771
RefSeq - NM_001142772
RefSeq - NM_001142773
RefSeq - NM_001354411
RefSeq - NM_001354420
RefSeq - NM_001354430
RefSeq - NM_033056
RefSeq - XM_017016571
RefSeq - XM_017016572
RefSeq - XM_017016573
RefSeq Peptide - NP_001136241
RefSeq Peptide - NP_001136242
RefSeq Peptide - NP_001136243
RefSeq Peptide - NP_001136244
RefSeq Peptide - NP_001136245
RefSeq Peptide - NP_001341333
RefSeq Peptide - NP_001341340
RefSeq Peptide - NP_001136237
RefSeq Peptide - NP_001341349
RefSeq Peptide - NP_001341359
RefSeq Peptide - NP_149045
RefSeq Peptide - NP_001136238
RefSeq Peptide - NP_001136235
RefSeq Peptide - NP_001136236
RefSeq Peptide - NP_001136239
RefSeq Peptide - NP_001136240
swissprot - A9Z1W1
swissprot - A2A3E8
swissprot - A2A3E7
swissprot - A2A3E6
swissprot - A2A3E5
swissprot - A2A3E4
swissprot - A2A3E3
swissprot - A2A3E1
swissprot - A2A3D9
swissprot - A2A3D8
swissprot - A0A087X250
swissprot - A0A087WZW3
swissprot - A0A087X1T6
swissprot - A0A087WZN9
swissprot - A0A087WZN4
swissprot - A0A087WZ37
swissprot - A0A087WXQ6
swissprot - A0A087WX70
swissprot - A0A087WUC7
swissprot - A0A087WUA8
swissprot - A0A087WTR6
swissprot - Q96QU1
swissprot - E7EMG8
swissprot - E7EMG0
swissprot - E7EM97
swissprot - E7EM53
swissprot - C9J4F3
swissprot - B7ZBT8
Ensembl - ENSG00000150275
  
Related genetic diseases (OMIM): 601067 - Usher syndrome, type 1D/F digenic, 601067
  602083 - Usher syndrome, type 1F, 602083
  609533 - Deafness, autosomal recessive 23, 609533
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh15aENSDARG00000098257Danio rerio
 pcdh15bENSDARG00000008127Danio rerio
 PCDH15ENSGALG00000002744Gallus gallus
 Pcdh15ENSMUSG00000052613Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y5I0 / PCDHA13 / protocadherin alpha 13ENSG0000023938914
Q9Y5I1 / PCDHA11 / protocadherin alpha 11ENSG0000024915813
PCDHA6 / Q9UN73 / protocadherin alpha 6ENSG0000008184213
PCDHA8 / Q9Y5H6 / protocadherin alpha 8ENSG0000020496213
PCDHA5 / Q9Y5H7 / protocadherin alpha 5ENSG0000020496513
PCDHA2 / Q9Y5H9 / protocadherin alpha 2ENSG0000020496913
PCDH1 / Q08174 / protocadherin 1ENSG0000015645313
Q9Y5I2 / PCDHA10 / protocadherin alpha 10ENSG0000025012013
PCDHA1 / Q9Y5I3 / protocadherin alpha 1ENSG0000020497013
PCDHA3 / Q9Y5H8 / protocadherin alpha 3ENSG0000025540813
PCDH9 / Q9HC56 / protocadherin 9ENSG0000018422613
PCDHA4 / Q9UN74 / protocadherin alpha 4ENSG0000020496713
Q9UN75 / PCDHA12 / protocadherin alpha 12ENSG0000025166413
PCDHA9 / Q9Y5H5 / protocadherin alpha 9ENSG0000020496113
Q9BZA7 / PCDH11X / protocadherin 11 X-linkedENSG0000010229013
PCDHA7 / Q9UN72 / protocadherin alpha 7ENSG0000020496313
PCDH7 / O60245 / protocadherin 7ENSG0000016985112
Q9BZA8 / PCDH11Y / protocadherin 11 Y-linkedENSG0000009971512
DCHS2 / dachsous cadherin-related 2ENSG0000019741011
AL592490.1ENSG0000019799111


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030718  Protocadherin-15


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001964 startle response IEA
 biological_processGO:0002009 morphogenesis of an epithelium IEA
 biological_processGO:0007015 actin filament organization IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0007628 adult walking behavior IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0042491 inner ear auditory receptor cell differentiation IEA
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0050910 detection of mechanical stimulus involved in sensory perception of sound IEA
 biological_processGO:0050953 sensory perception of light stimulus IMP
 biological_processGO:0050957 equilibrioception IMP
 biological_processGO:0050973 detection of mechanical stimulus involved in equilibrioception IEA
 biological_processGO:0051017 actin filament bundle assembly IEA
 biological_processGO:0060013 righting reflex IEA
 biological_processGO:0060088 auditory receptor cell stereocilium organization IEA
 biological_processGO:0060122 inner ear receptor cell stereocilium organization IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 cellular_componentGO:0001750 photoreceptor outer segment IDA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0032420 stereocilium IEA
 cellular_componentGO:0032421 stereocilium bundle IEA
 cellular_componentGO:0045202 synapse IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000375 Abnormality of cochlea "An abnormality of the cochlea, which is an inner ear structure comprised of a snail-shell like structure divided into three fluid-filled parts. Two are canals for the transmission of pressure and in the third is the organ of Corti, which detects pressure impulses and responds with electrical impulses which travel along the auditory nerve to the brain." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000572 Visual loss 
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 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001751 Vestibular dysfunction 
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 HP:0001756 Vestibular hypofunction 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0003593 Early onset 
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0008499 High-grade hypermetropia 
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 HP:0008527 Congenital sensorineural hearing loss 
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 HP:0012157 Subcortical cerebral atrophy "Atrophy of the cerebral subcortical white and gray matter, termed subcortical atrophy, reflects loss of nerve cells in the basal ganglia or fibers in the deep white matter." [HPO:probinson, pmid:20813998]
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 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
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 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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