ENSG00000239389


Homo sapiens

Features
Gene ID: ENSG00000239389
  
Biological name :PCDHA13
  
Synonyms : PCDHA13 / protocadherin alpha 13 / Q9Y5I0
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q31.3
Gene start: 140882208
Gene end: 141012344
  
Corresponding Affymetrix probe sets: 210674_s_at (Human Genome U133 Plus 2.0 Array)   223435_s_at (Human Genome U133 Plus 2.0 Array)   224212_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000289272
Ensembl peptide - ENSP00000479167
Ensembl peptide - ENSP00000386821
NCBI entrez gene - 56136     See in Manteia.
OMIM - 606319
RefSeq - NM_018904
RefSeq - NM_031865
RefSeq Peptide - NP_061727
RefSeq Peptide - NP_114071
swissprot - C9JA99
swissprot - Q9Y5I0
Ensembl - ENSG00000239389
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1a3ENSDARG00000104598Danio rerio
 pcdh1a3ENSDARG00000103602Danio rerio
 pcdh1g9ENSDARG00000057519Danio rerio
 pcdh2aa1ENSDARG00000037695Danio rerio
 pcdh2aa15ENSDARG00000088136Danio rerio
 pcdh2ab1ENSDARG00000071904Danio rerio
 pcdh2ab1ENSDARG00000089874Danio rerio
 pcdh2ab12ENSDARG00000104080Danio rerio
 pcdh2ab2ENSDARG00000099468Danio rerio
 pcdh2ab2ENSDARG00000037691Danio rerio
 pcdh2ab3ENSDARG00000102719Danio rerio
 pcdh2ab6ENSDARG00000091043Danio rerio
 si:ch73-379j16.2ENSDARG00000099535Danio rerio
 si:dkey-262j3.7ENSDARG00000104141Danio rerio
 si:dkeyp-115d7.2ENSDARG00000089297Danio rerio
 PCDHA2ENSGALG00000043142Gallus gallus
 Pcdha12ENSMUSG00000103310Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDHA4 / Q9UN74 / protocadherin alpha 4ENSG0000020496783
PCDHA2 / Q9Y5H9 / protocadherin alpha 2ENSG0000020496982
PCDHA3 / Q9Y5H8 / protocadherin alpha 3ENSG0000025540882
PCDHA8 / Q9Y5H6 / protocadherin alpha 8ENSG0000020496281
PCDHA1 / Q9Y5I3 / protocadherin alpha 1ENSG0000020497081
PCDHA7 / Q9UN72 / protocadherin alpha 7ENSG0000020496381
Q9Y5I1 / PCDHA11 / protocadherin alpha 11ENSG0000024915881
PCDHA9 / Q9Y5H5 / protocadherin alpha 9ENSG0000020496181
Q9UN75 / PCDHA12 / protocadherin alpha 12ENSG0000025166480
PCDHA6 / Q9UN73 / protocadherin alpha 6ENSG0000008184280
Q9Y5I2 / PCDHA10 / protocadherin alpha 10ENSG0000025012080
PCDHA5 / Q9Y5H7 / protocadherin alpha 5ENSG0000020496579
PCDH1 / Q08174 / protocadherin 1ENSG0000015645330
PCDH15 / Q96QU1 / protocadherin related 15ENSG0000015027529
PCDH9 / Q9HC56 / protocadherin 9ENSG0000018422629
Q9BZA7 / PCDH11X / protocadherin 11 X-linkedENSG0000010229028
PCDH7 / O60245 / protocadherin 7ENSG0000016985127
Q9BZA8 / PCDH11Y / protocadherin 11 Y-linkedENSG0000009971526
DCHS2 / dachsous cadherin-related 2ENSG0000019741025
PCDH20 / Q8N6Y1 / protocadherin 20ENSG0000028016524


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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