ENSDARG00000104598


Danio rerio

Features
Gene ID: ENSDARG00000104598
  
Biological name :pcdh1a3
  
Synonyms : pcdh1a3 / pcdh1a6 / protocadherin 1 alpha 3
  
Possible biological names infered from orthology : O88689 / PCDHA1 / PCDHA10 / PCDHA11 / PCDHA12 / PCDHA13 / PCDHA2 / PCDHA3 / PCDHA4 / PCDHA5 / PCDHA6 / PCDHA7 / PCDHA8 / PCDHA9 / protocadherin alpha 1 / protocadherin alpha 10 / protocadherin alpha 11 / protocadherin alpha 12 / protocadherin alpha 13 / protocadherin alpha 2 / protocadherin alpha 3 / protocadherin alpha 4 / protocadherin alpha 5 / protocadherin alpha 6 / protocadherin alpha 7 / protocadherin alpha 8 / protocadherin alpha 9 / Q91Y11 / Q91Y13 / Q91Y20 / Q9UN72 / Q9UN73 / Q9UN74 / Q9UN75 / Q9Y5H5 / Q9Y5H6 / Q9Y5H7 / Q9Y5H8 / Q9Y5H9 / Q9Y5I0 / Q9Y5I1 / Q9Y5I2 / Q9Y5I3
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 21559605
Gene end: 21648767
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000110356
Ensembl peptide - ENSDARP00000091372
Ensembl peptide - ENSDARP00000131141
Ensembl peptide - ENSDARP00000138315
NCBI entrez gene - 497129     See in Manteia.
RefSeq - NM_001024101
RefSeq Peptide - NP_001019272
swissprot - F1QHA0
swissprot - A0A0N4STS2
swissprot - F1QU02
swissprot - I6LC33
ZFIN ID - ZDB-GENE-050202-3
ZFIN ID - ZDB-GENE-050203-2
Ensembl - ENSDARG00000104598
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCDHA2ENSGALG00000043142Gallus gallus
 PCDHA1ENSG00000204970Homo sapiens
 PCDHA2ENSG00000204969Homo sapiens
 PCDHA3ENSG00000255408Homo sapiens
 PCDHA4ENSG00000204967Homo sapiens
 PCDHA5ENSG00000204965Homo sapiens
 PCDHA6ENSG00000081842Homo sapiens
 PCDHA7ENSG00000204963Homo sapiens
 PCDHA8ENSG00000204962Homo sapiens
 PCDHA9ENSG00000204961Homo sapiens
 Q9UN75ENSG00000251664Homo sapiens
 Q9Y5I0ENSG00000239389Homo sapiens
 Q9Y5I1ENSG00000249158Homo sapiens
 Q9Y5I2ENSG00000250120Homo sapiens
 O88689ENSMUSG00000104252Mus musculus
 Pcdha1ENSMUSG00000103442Mus musculus
 Pcdha11ENSMUSG00000102206Mus musculus
 Pcdha12ENSMUSG00000103310Mus musculus
 Pcdha5ENSMUSG00000103092Mus musculus
 Pcdha6ENSMUSG00000103707Mus musculus
 Pcdha7ENSMUSG00000104318Mus musculus
 Pcdha8ENSMUSG00000103800Mus musculus
 Pcdha9ENSMUSG00000103770Mus musculus
 Q91Y20ENSMUSG00000007440Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcdh1a3 / protocadherin 1 alpha 3 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y...ENSDARG0000010360285
pcdh2ab2 / protocadherin 2 alpha b2 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q...ENSDARG0000009946868
pcdh2ab1 / pcdh2ab8 / protocadherin 2 alpha b 8 / PCDHA3* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* /...ENSDARG0000008987468
pcdh2ab3 / protocadherin 2 alpha b 3 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000010271968
pcdh2ab2 / protocadherin 2 alpha b2 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q...ENSDARG0000003769168
pcdh2ab6 / protocadherin 2 alpha b 6 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000009104367
pcdh2ab12 / protocadherin 2 alpha b 12 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* ...ENSDARG0000010408066
pcdh2ab1 / protocadherin 2 alpha b 1 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000007190465
si:dkey-262j3.7 / PCDHA1* / PCDHA5* / O88689* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y5H9* / Q9Y5I0* / Q...ENSDARG0000010414159
si:dkeyp-115d7.2 / PCDHA1* / PCDHA5* / O88689* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y5H9* / Q9Y5I0* / ...ENSDARG0000008929754
pcdh2aa15 / protocadherin 2 alpha a 15 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* ...ENSDARG0000008813647
pcdh2aa1 / protocadherin 2 alpha a 1 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / ...ENSDARG0000003769545
pcdh10b / protocadherin 10bENSDARG0000010282439
BX957322.3ENSDARG0000010735338
pcdh1g9 / protocadherin 1 gamma 9 / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y...ENSDARG0000005751938
si:ch73-379j16.2 / PCDHA1* / PCDHA5* / O88689* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5H6* / Q9Y5H7* / Q9Y5H8* / Q9Y5H9* / Q9Y5I0* / ...ENSDARG0000009953534
si:ch73-233f7.8ENSDARG0000010042432
pcdh7b / protocadherin 7b / PCDH7* / O60245* / protocadherin 7*ENSDARG0000006061029
pcdh7a / protocadherin 7aENSDARG0000007889828
pcdh1a / protocadherin 1a / PCDH1* / Q08174* / protocadherin 1*ENSDARG0000006272028


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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