ENSMUSG00000103707


Mus musculus

Features
Gene ID: ENSMUSG00000103707
  
Biological name :Pcdha6
  
Synonyms : Pcdha6
  
Possible biological names infered from orthology : PCDHA8 / protocadherin alpha 6 / protocadherin alpha 8 / Q9UN73 / Q9Y5H6
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B2
Gene start: 36967631
Gene end: 37187657
  
Corresponding Affymetrix probe sets: 1420798_s_at (Mouse Genome 430 2.0 Array)   1424341_s_at (Mouse Genome 430 2.0 Array)   1451769_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000141459
Ensembl peptide - ENSMUSP00000142285
Ensembl peptide - ENSMUSP00000141587
NCBI entrez gene - 12937     See in Manteia.
MGI - MGI:1298367
RefSeq - NM_007767
RefSeq Peptide - NP_031793
swissprot - B9EKB6
swissprot - A0A0A6YY55
swissprot - Q91Y14
Ensembl - ENSMUSG00000103707
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1a3ENSDARG00000103602Danio rerio
 pcdh1a3ENSDARG00000104598Danio rerio
 pcdh1g9ENSDARG00000057519Danio rerio
 pcdh2aa1ENSDARG00000037695Danio rerio
 pcdh2aa15ENSDARG00000088136Danio rerio
 pcdh2ab1ENSDARG00000071904Danio rerio
 pcdh2ab1ENSDARG00000089874Danio rerio
 pcdh2ab12ENSDARG00000104080Danio rerio
 pcdh2ab2ENSDARG00000037691Danio rerio
 pcdh2ab2ENSDARG00000099468Danio rerio
 pcdh2ab3ENSDARG00000102719Danio rerio
 pcdh2ab6ENSDARG00000091043Danio rerio
 si:ch73-379j16.2ENSDARG00000099535Danio rerio
 si:dkey-262j3.7ENSDARG00000104141Danio rerio
 si:dkeyp-115d7.2ENSDARG00000089297Danio rerio
 PCDHA2ENSGALG00000043142Gallus gallus
 PCDHA6ENSG00000081842Homo sapiens
 PCDHA8ENSG00000204962Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdha12 / protocadherin alpha 12 / Q9Y5I0* / PCDHA13* / protocadherin alpha 13*ENSMUSG0000010331080
Q91Y20 / Pcdha11 / protocadherin alpha 11ENSMUSG0000000744080
Pcdha9 / Q91Y11 / Protocadherin alpha-9 / Q9Y5I2* / PCDHA10* / protocadherin alpha 10*ENSMUSG0000010377080
Pcdha1 / protocadherin alpha 1 / Q9Y5I3*ENSMUSG0000010344279
Pcdha5 / protocadherin alpha 5 / Q9Y5H7*ENSMUSG0000010309279
Pcdha11 / protocadherin alpha 11 / Q9Y5I1*ENSMUSG0000010220679
O88689 / Pcdha4 / Protocadherin alpha-4 / Q9UN74*ENSMUSG0000010425278
Q91Y13 / Pcdha7 / Protocadherin alpha-7 / Q9Y5H5* / PCDHA9* / Q9UN72* / protocadherin alpha 9*ENSMUSG0000010431878
Pcdha8 / protocadherin alpha 8 / Q9Y5H5* / PCDHA7* / PCDHA9* / Q9UN72* / protocadherin alpha 7* / protocadherin alpha 9*ENSMUSG0000010380077
Pcdhga9ENSMUSG0000010244036
Pcdhgc3 / protocadherin gamma subfamily C, 3ENSMUSG0000010291836
Pcdh7 / protocadherin 7 / O60245*ENSMUSG0000002910832
Pcdh9 / protocadherin 9 / Q9HC56*ENSMUSG0000005542130
Pcdh11x / protocadherin 11 X-linked / Q9BZA7* / Q9BZA8* / PCDH11Y* / protocadherin 11 Y-linked*ENSMUSG0000003475529
Pcdh1 / protocadherin 1 / Q08174*ENSMUSG0000005137529
Pcdh15 / Q99PJ1 / Protocadherin-15 / Q96QU1* / protocadherin related 15*ENSMUSG0000005261327
Pcdh20 / Q8BIZ0 / Protocadherin-20 / Q8N6Y1* / AL592490.1*ENSMUSG0000005050524


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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