ENSMUSG00000029108


Mus musculus

Features
Gene ID: ENSMUSG00000029108
  
Biological name :Pcdh7
  
Synonyms : Pcdh7 / protocadherin 7
  
Possible biological names infered from orthology : O60245
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: C1
Gene start: 57717967
Gene end: 58133230
  
Corresponding Affymetrix probe sets: 10521972 (MoGene1.0st)   1427592_at (Mouse Genome 430 2.0 Array)   1437442_at (Mouse Genome 430 2.0 Array)   1449249_at (Mouse Genome 430 2.0 Array)   1456214_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000066306
Ensembl peptide - ENSMUSP00000141378
Ensembl peptide - ENSMUSP00000092376
Ensembl peptide - ENSMUSP00000143387
Ensembl peptide - ENSMUSP00000142319
Ensembl peptide - ENSMUSP00000142276
Ensembl peptide - ENSMUSP00000141505
NCBI entrez gene - 54216     See in Manteia.
MGI - MGI:1860487
RefSeq - XM_017320993
RefSeq - NM_001310606
RefSeq - NM_001310608
RefSeq - NM_018764
RefSeq - XM_006504019
RefSeq - XM_006504020
RefSeq - XM_006504022
RefSeq - XM_006504023
RefSeq - XM_006504025
RefSeq - XM_006504028
RefSeq - XM_006504030
RefSeq - XM_017320992
RefSeq - NM_001122758
RefSeq Peptide - NP_001297537
RefSeq Peptide - NP_061234
RefSeq Peptide - NP_001297535
RefSeq Peptide - NP_001116230
swissprot - A0A0A6YY48
swissprot - E9Q2S0
swissprot - A0A0A6YW34
swissprot - A0A0A6YWD5
swissprot - A2RS43
swissprot - A0A0G2JG16
swissprot - A0A0A6YY83
Ensembl - ENSMUSG00000029108
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh7bENSDARG00000060610Danio rerio
 PCDH7ENSGALG00000033883Gallus gallus
 PCDH7ENSG00000169851Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdh1 / protocadherin 1 / Q08174*ENSMUSG0000005137542
Pcdh9 / protocadherin 9 / Q9HC56*ENSMUSG0000005542136
Pcdh11x / protocadherin 11 X-linked / Q9BZA7* / Q9BZA8* / PCDH11Y* / protocadherin 11 Y-linked*ENSMUSG0000003475535
O88689 / Pcdha4 / Protocadherin alpha-4 / Q9UN74*ENSMUSG0000010425224
Pcdha12 / protocadherin alpha 12 / Q9Y5I0* / PCDHA13* / protocadherin alpha 13*ENSMUSG0000010331024
Pcdha9 / Q91Y11 / Protocadherin alpha-9 / Q9Y5I2* / PCDHA10* / protocadherin alpha 10*ENSMUSG0000010377024
Q91Y20 / Pcdha11 / protocadherin alpha 11ENSMUSG0000000744024
Pcdha6 / Q9UN73* / Q9Y5H6* / PCDHA8* / protocadherin alpha 6* / protocadherin alpha 8*ENSMUSG0000010370724
Pcdha1 / protocadherin alpha 1 / Q9Y5I3*ENSMUSG0000010344224
Pcdha5 / protocadherin alpha 5 / Q9Y5H7*ENSMUSG0000010309224
Pcdha11 / protocadherin alpha 11 / Q9Y5I1*ENSMUSG0000010220624
Pcdh20 / Q8BIZ0 / Protocadherin-20 / Q8N6Y1* / AL592490.1*ENSMUSG0000005050524
Q91Y13 / Pcdha7 / Protocadherin alpha-7 / Q9Y5H5* / PCDHA9* / Q9UN72* / protocadherin alpha 9*ENSMUSG0000010431823
Pcdha8 / protocadherin alpha 8 / Q9Y5H5* / PCDHA7* / PCDHA9* / Q9UN72* / protocadherin alpha 7* / protocadherin alpha 9*ENSMUSG0000010380023
Pcdhgc3 / protocadherin gamma subfamily C, 3ENSMUSG0000010291821
Pcdh15 / Q99PJ1 / Protocadherin-15 / Q96QU1* / protocadherin related 15*ENSMUSG0000005261320
Pcdhga9ENSMUSG0000010244020


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR013585  Protocadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005886 plasma membrane ISO
 cellular_componentGO:0005887 integral component of plasma membrane ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Platelet degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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