ENSMUSG00000051375


Mus musculus

Features
Gene ID: ENSMUSG00000051375
  
Biological name :Pcdh1
  
Synonyms : Pcdh1 / protocadherin 1
  
Possible biological names infered from orthology : Q08174
  
Species: Mus musculus
  
Chr. number: 18
Strand: -1
Band: B3
Gene start: 38185914
Gene end: 38212053
  
Corresponding Affymetrix probe sets: 10458534 (MoGene1.0st)   1452294_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000125576
Ensembl peptide - ENSMUSP00000125309
Ensembl peptide - ENSMUSP00000141877
Ensembl peptide - ENSMUSP00000142328
Ensembl peptide - ENSMUSP00000055199
Ensembl peptide - ENSMUSP00000124732
NCBI entrez gene - 75599     See in Manteia.
MGI - MGI:104692
RefSeq - XM_017318005
RefSeq - NM_029357
RefSeq - XM_006526320
RefSeq - XM_006526321
RefSeq - XM_006526322
RefSeq - XM_006526323
RefSeq Peptide - NP_083633
swissprot - Q8CFX3
swissprot - E0CXD4
swissprot - F7BJK1
swissprot - A0A0A6YY88
swissprot - A0A0A6YX79
Ensembl - ENSMUSG00000051375
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1aENSDARG00000062720Danio rerio
 pcdh1bENSDARG00000036175Danio rerio
 PCDH1ENSGALG00000002553Gallus gallus
 PCDH1ENSG00000156453Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdh7 / protocadherin 7 / O60245*ENSMUSG0000002910850
Pcdh9 / protocadherin 9 / Q9HC56*ENSMUSG0000005542141
Pcdh11x / protocadherin 11 X-linked / Q9BZA7* / Q9BZA8* / PCDH11Y* / protocadherin 11 Y-linked*ENSMUSG0000003475539
Pcdh20 / Q8BIZ0 / Protocadherin-20 / Q8N6Y1* / AL592490.1*ENSMUSG0000005050529
Pcdha6 / Q9UN73* / Q9Y5H6* / PCDHA8* / protocadherin alpha 6* / protocadherin alpha 8*ENSMUSG0000010370726
Pcdha1 / protocadherin alpha 1 / Q9Y5I3*ENSMUSG0000010344225
Pcdha9 / Q91Y11 / Protocadherin alpha-9 / Q9Y5I2* / PCDHA10* / protocadherin alpha 10*ENSMUSG0000010377025
Q91Y20 / Pcdha11 / protocadherin alpha 11ENSMUSG0000000744025
Q91Y13 / Pcdha7 / Protocadherin alpha-7 / Q9Y5H5* / PCDHA9* / Q9UN72* / protocadherin alpha 9*ENSMUSG0000010431825
Pcdha12 / protocadherin alpha 12 / Q9Y5I0* / PCDHA13* / protocadherin alpha 13*ENSMUSG0000010331025
Pcdha11 / protocadherin alpha 11 / Q9Y5I1*ENSMUSG0000010220625
Pcdha5 / protocadherin alpha 5 / Q9Y5H7*ENSMUSG0000010309225
Pcdha8 / protocadherin alpha 8 / Q9Y5H5* / PCDHA7* / PCDHA9* / Q9UN72* / protocadherin alpha 7* / protocadherin alpha 9*ENSMUSG0000010380025
O88689 / Pcdha4 / Protocadherin alpha-4 / Q9UN74*ENSMUSG0000010425225
Pcdhga9ENSMUSG0000010244024
Pcdhgc3 / protocadherin gamma subfamily C, 3ENSMUSG0000010291824
Pcdh15 / Q99PJ1 / Protocadherin-15 / Q96QU1* / protocadherin related 15*ENSMUSG0000005261322


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR013585  Protocadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules TAS
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules TAS
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction ISO
 cellular_componentGO:0043231 intracellular membrane-bounded organelle ISO
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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