ENSMUSG00000104252


Mus musculus

Features
Gene ID: ENSMUSG00000104252
  
Biological name :Pcdha4
  
Synonyms : O88689 / Pcdha4 / Protocadherin alpha-4
  
Possible biological names infered from orthology : Q9UN74
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B2
Gene start: 36952648
Gene end: 37187661
  
Corresponding Affymetrix probe sets: 1420798_s_at (Mouse Genome 430 2.0 Array)   1424341_s_at (Mouse Genome 430 2.0 Array)   1451769_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000141408
Ensembl peptide - ENSMUSP00000142103
NCBI entrez gene - 12936     See in Manteia.
MGI - MGI:1298406
RefSeq - NM_007766
RefSeq Peptide - NP_031792
swissprot - O88689
Ensembl - ENSMUSG00000104252
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1a3ENSDARG00000104598Danio rerio
 pcdh1a3ENSDARG00000103602Danio rerio
 pcdh1g9ENSDARG00000057519Danio rerio
 pcdh2aa1ENSDARG00000037695Danio rerio
 pcdh2aa15ENSDARG00000088136Danio rerio
 pcdh2ab1ENSDARG00000071904Danio rerio
 pcdh2ab1ENSDARG00000089874Danio rerio
 pcdh2ab12ENSDARG00000104080Danio rerio
 pcdh2ab2ENSDARG00000099468Danio rerio
 pcdh2ab2ENSDARG00000037691Danio rerio
 pcdh2ab3ENSDARG00000102719Danio rerio
 pcdh2ab6ENSDARG00000091043Danio rerio
 si:ch73-379j16.2ENSDARG00000099535Danio rerio
 si:dkey-262j3.7ENSDARG00000104141Danio rerio
 si:dkeyp-115d7.2ENSDARG00000089297Danio rerio
 PCDHA2ENSGALG00000043142Gallus gallus
 PCDHA4ENSG00000204967Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q91Y20 / Pcdha11 / protocadherin alpha 11ENSMUSG0000000744081
Q91Y13 / Pcdha7 / Protocadherin alpha-7 / Q9Y5H5* / PCDHA9* / Q9UN72* / protocadherin alpha 9*ENSMUSG0000010431881
Pcdha12 / protocadherin alpha 12 / Q9Y5I0* / PCDHA13* / protocadherin alpha 13*ENSMUSG0000010331081
Pcdha8 / protocadherin alpha 8 / Q9Y5H5* / PCDHA7* / PCDHA9* / Q9UN72* / protocadherin alpha 7* / protocadherin alpha 9*ENSMUSG0000010380081
Pcdha1 / protocadherin alpha 1 / Q9Y5I3*ENSMUSG0000010344280
Pcdha5 / protocadherin alpha 5 / Q9Y5H7*ENSMUSG0000010309279
Pcdha9 / Q91Y11 / Protocadherin alpha-9 / Q9Y5I2* / PCDHA10* / protocadherin alpha 10*ENSMUSG0000010377078
Pcdha6 / Q9UN73* / Q9Y5H6* / PCDHA8* / protocadherin alpha 6* / protocadherin alpha 8*ENSMUSG0000010370778
Pcdha11 / protocadherin alpha 11 / Q9Y5I1*ENSMUSG0000010220678
Pcdhgc3 / protocadherin gamma subfamily C, 3ENSMUSG0000010291836
Pcdhga9ENSMUSG0000010244036
Pcdh7 / protocadherin 7 / O60245*ENSMUSG0000002910832
Pcdh9 / protocadherin 9 / Q9HC56*ENSMUSG0000005542129
Pcdh11x / protocadherin 11 X-linked / Q9BZA7* / Q9BZA8* / PCDH11Y* / protocadherin 11 Y-linked*ENSMUSG0000003475529
Pcdh1 / protocadherin 1 / Q08174*ENSMUSG0000005137528
Pcdh15 / Q99PJ1 / Protocadherin-15 / Q96QU1* / protocadherin related 15*ENSMUSG0000005261327
Pcdh20 / Q8BIZ0 / Protocadherin-20 / Q8N6Y1* / AL592490.1*ENSMUSG0000005050524


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IC
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045202 synapse IDA
 molecular_functionGO:0005509 calcium ion binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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