ENSMUSG00000050505


Mus musculus

Features
Gene ID: ENSMUSG00000050505
  
Biological name :Pcdh20
  
Synonyms : Pcdh20 / Protocadherin-20 / Q8BIZ0
  
Possible biological names infered from orthology : AL592490.1 / Q8N6Y1
  
Species: Mus musculus
  
Chr. number: 14
Strand: -1
Band: E1
Gene start: 88464743
Gene end: 88471396
  
Corresponding Affymetrix probe sets: 10421911 (MoGene1.0st)   1424701_at (Mouse Genome 430 2.0 Array)   1451454_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000054774
Ensembl peptide - ENSMUSP00000141860
NCBI entrez gene - 219257     See in Manteia.
MGI - MGI:2443376
RefSeq - NM_178685
RefSeq Peptide - NP_848800
swissprot - Q8BIZ0
Ensembl - ENSMUSG00000050505
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh20ENSDARG00000036424Danio rerio
 ENSGALG00000016934Gallus gallus
 AL592490.1ENSG00000197991Homo sapiens
 PCDH20ENSG00000280165Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdh9 / protocadherin 9 / Q9HC56*ENSMUSG0000005542139
Pcdh11x / protocadherin 11 X-linked / Q9BZA7* / Q9BZA8* / PCDH11Y* / protocadherin 11 Y-linked*ENSMUSG0000003475537
Pcdh7 / protocadherin 7 / O60245*ENSMUSG0000002910832
Pcdh1 / protocadherin 1 / Q08174*ENSMUSG0000005137532
Pcdha8 / protocadherin alpha 8 / Q9Y5H5* / PCDHA7* / PCDHA9* / Q9UN72* / protocadherin alpha 7* / protocadherin alpha 9*ENSMUSG0000010380025
Q91Y13 / Pcdha7 / Protocadherin alpha-7 / Q9Y5H5* / PCDHA9* / Q9UN72* / protocadherin alpha 9*ENSMUSG0000010431824
Pcdha6 / Q9UN73* / Q9Y5H6* / PCDHA8* / protocadherin alpha 6* / protocadherin alpha 8*ENSMUSG0000010370724
O88689 / Pcdha4 / Protocadherin alpha-4 / Q9UN74*ENSMUSG0000010425224
Pcdha12 / protocadherin alpha 12 / Q9Y5I0* / PCDHA13* / protocadherin alpha 13*ENSMUSG0000010331024
Pcdha9 / Q91Y11 / Protocadherin alpha-9 / Q9Y5I2* / PCDHA10* / protocadherin alpha 10*ENSMUSG0000010377024
Pcdha5 / protocadherin alpha 5 / Q9Y5H7*ENSMUSG0000010309224
Pcdha11 / protocadherin alpha 11 / Q9Y5I1*ENSMUSG0000010220624
Q91Y20 / Pcdha11 / protocadherin alpha 11ENSMUSG0000000744024
Pcdha1 / protocadherin alpha 1 / Q9Y5I3*ENSMUSG0000010344223
Pcdh15 / Q99PJ1 / Protocadherin-15 / Q96QU1* / protocadherin related 15*ENSMUSG0000005261322
Pcdhgc3 / protocadherin gamma subfamily C, 3ENSMUSG0000010291822
Pcdhga9ENSMUSG0000010244022


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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