ENSG00000280165


Homo sapiens

Features
Gene ID: ENSG00000280165
  
Biological name :PCDH20
  
Synonyms : PCDH20 / protocadherin 20 / Q8N6Y1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 13
Strand: -1
Band: q21.2
Gene start: 61409685
Gene end: 61415522
  
Corresponding Affymetrix probe sets: 232054_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387250
NCBI entrez gene - 64881     See in Manteia.
OMIM - 614449
RefSeq - NM_022843
RefSeq Peptide - NP_073754
swissprot - Q8N6Y1
Ensembl - ENSG00000280165
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh20ENSDARG00000036424Danio rerio
 ENSGALG00000016934Gallus gallus
 Pcdh20ENSMUSG00000050505Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AL592490.1ENSG00000197991100
PCDH9 / Q9HC56 / protocadherin 9ENSG0000018422639
Q9BZA8 / PCDH11Y / protocadherin 11 Y-linkedENSG0000009971538
Q9BZA7 / PCDH11X / protocadherin 11 X-linkedENSG0000010229037
PCDH1 / Q08174 / protocadherin 1ENSG0000015645332
PCDH7 / O60245 / protocadherin 7ENSG0000016985132
Q9Y5I0 / PCDHA13 / protocadherin alpha 13ENSG0000023938924
PCDHA3 / Q9Y5H8 / protocadherin alpha 3ENSG0000025540824
PCDHA6 / Q9UN73 / protocadherin alpha 6ENSG0000008184224
PCDHA8 / Q9Y5H6 / protocadherin alpha 8ENSG0000020496224
PCDHA5 / Q9Y5H7 / protocadherin alpha 5ENSG0000020496524
PCDHA9 / Q9Y5H5 / protocadherin alpha 9ENSG0000020496124
PCDHA7 / Q9UN72 / protocadherin alpha 7ENSG0000020496323
Q9Y5I2 / PCDHA10 / protocadherin alpha 10ENSG0000025012023
Q9UN75 / PCDHA12 / protocadherin alpha 12ENSG0000025166423
Q9Y5I1 / PCDHA11 / protocadherin alpha 11ENSG0000024915823
PCDHA2 / Q9Y5H9 / protocadherin alpha 2ENSG0000020496923
PCDHA4 / Q9UN74 / protocadherin alpha 4ENSG0000020496723
PCDH15 / Q96QU1 / protocadherin related 15ENSG0000015027522
PCDHA1 / Q9Y5I3 / protocadherin alpha 1ENSG0000020497022


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr