ENSGALG00000016934


Gallus gallus

Features
Gene ID: ENSGALG00000016934
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : AL592490.1 / PCDH20 / protocadherin 20 / Q8BIZ0 / Q8N6Y1
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 161850346
Gene end: 161854217
  
Corresponding Affymetrix probe sets: GgaAffx.10846.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027323
NCBI entrez gene - 428063     See in Manteia.
RefSeq - XM_004938656
swissprot - F1NY34
Ensembl - ENSGALG00000016934
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh20ENSDARG00000036424Danio rerio
 AL592490.1ENSG00000197991Homo sapiens
 PCDH20ENSG00000280165Homo sapiens
 Pcdh20ENSMUSG00000050505Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*ENSGALG0000000685139
PCDH9 / protocadherin 9 / Q9HC56*ENSGALG0000001690839
PCDH1 / protocadherin-1 precursor / Q08174* / protocadherin 1*ENSGALG0000000255332
ENSGALG0000004260623
PCDHA2 / Gallus gallus protocadherin alpha 12 (PCDHA12), mRNA. / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5...ENSGALG0000004314223
PCDH10ENSGALG0000000971923
PCDH15 / Q0ZM14 / Protocadherin-15 / Q99PJ1* / Q96QU1* / protocadherin related 15*ENSGALG0000000274421
PCDH7 / protocadherin 7 / O60245*ENSGALG0000003388320
ENSGALG0000002393410
Pcdhgc3* / protocadherin gamma subfamily C, 3*ENSGALG000000366299


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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