ENSGALG00000016908


Gallus gallus

Features
Gene ID: ENSGALG00000016908
  
Biological name :PCDH9
  
Synonyms : PCDH9 / protocadherin 9
  
Possible biological names infered from orthology : Q9HC56
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 159096610
Gene end: 159285693
  
Corresponding Affymetrix probe sets: Gga.3348.2.S1_s_at (Chicken Array)   Gga.3348.3.S1_at (Chicken Array)   GgaAffx.25120.1.A1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000027278
Ensembl peptide - ENSGALP00000054038
Ensembl peptide - ENSGALP00000050488
NCBI entrez gene - 418800     See in Manteia.
RefSeq - XM_003640559
RefSeq - XM_015276916
RefSeq - XM_015276921
swissprot - E1BQF1
swissprot - A0A1D5PMG0
swissprot - A0A1D5PCJ9
Ensembl - ENSGALG00000016908
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh9ENSDARG00000063264Danio rerio
 PCDH9ENSG00000184226Homo sapiens
 Pcdh9ENSMUSG00000055421Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*ENSGALG0000000685167
PCDH1 / protocadherin-1 precursor / Q08174* / protocadherin 1*ENSGALG0000000255341
PCDH20* / Q8BIZ0* / Q8N6Y1* / AL592490.1* / protocadherin 20*ENSGALG0000001693436
PCDH7 / protocadherin 7 / O60245*ENSGALG0000003388328
PCDH10ENSGALG0000000971925
ENSGALG0000004260624
PCDH15 / Q0ZM14 / Protocadherin-15 / Q99PJ1* / Q96QU1* / protocadherin related 15*ENSGALG0000000274423
PCDHA2 / Gallus gallus protocadherin alpha 12 (PCDHA12), mRNA. / PCDHA4* / O88689* / PCDHA1* / PCDHA9* / Q91Y11* / Q91Y13* / Q91Y20* / Q9UN72* / Q9UN73* / Q9UN74* / Q9UN75* / Q9Y5H5* / Q9Y5...ENSGALG0000004314222
ENSGALG0000002393410
Pcdhgc3* / protocadherin gamma subfamily C, 3*ENSGALG000000366297


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR013585  Protocadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0044291 cell-cell contact zone IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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