ENSGALG00000043142


Gallus gallus

Features
Gene ID: ENSGALG00000043142
  
Biological name :PCDHA2
  
Synonyms : Gallus gallus protocadherin alpha 12 (PCDHA12), mRNA. / PCDHA2
  
Possible biological names infered from orthology : O88689 / PCDHA1 / PCDHA10 / PCDHA11 / PCDHA12 / PCDHA13 / PCDHA3 / PCDHA4 / PCDHA5 / PCDHA6 / PCDHA7 / PCDHA8 / PCDHA9 / protocadherin alpha 1 / protocadherin alpha 10 / protocadherin alpha 11 / protocadherin alpha 12 / protocadherin alpha 13 / protocadherin alpha 2 / protocadherin alpha 3 / protocadherin alpha 4 / protocadherin alpha 5 / protocadherin alpha 6 / protocadherin alpha 7 / protocadherin alpha 8 / protocadherin alpha 9 / Q91Y11 / Q91Y13 / Q91Y20 / Q9UN72 / Q9UN73 / Q9UN74 / Q9UN75 / Q9Y5H5 / Q9Y5H6 / Q9Y5H7 / Q9Y5H8 / Q9Y5H9 / Q9Y5I0 / Q9Y5I1 / Q9Y5I2 / Q9Y5I3
  
Species: Gallus gallus
  
Chr. number: 13
Strand: -1
Band:
Gene start: 704847
Gene end: 869303
  
Corresponding Affymetrix probe sets: GgaAffx.483.3.S1_at (Chicken Array)   GgaAffx.483.9.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047793
Ensembl peptide - ENSGALP00000058550
Ensembl peptide - ENSGALP00000058433
Ensembl peptide - ENSGALP00000054137
Ensembl peptide - ENSGALP00000052297
Ensembl peptide - ENSGALP00000050023
Ensembl peptide - ENSGALP00000048821
Ensembl peptide - ENSGALP00000048563
Ensembl peptide - ENSGALP00000048549
Ensembl peptide - ENSGALP00000048434
NCBI entrez gene - 497211     See in Manteia.
NCBI entrez gene - 497212     See in Manteia.
NCBI entrez gene - 497214     See in Manteia.
NCBI entrez gene - 497215     See in Manteia.
NCBI entrez gene - 497217     See in Manteia.
NCBI entrez gene - 497218     See in Manteia.
NCBI entrez gene - 497219     See in Manteia.
NCBI entrez gene - 497221     See in Manteia.
NCBI entrez gene - 497222     See in Manteia.
NCBI entrez gene - 497224     See in Manteia.
RefSeq - NM_001111128
RefSeq - NM_001111126
RefSeq - NM_001111129
RefSeq - NM_001111131
RefSeq - NM_001111132
RefSeq - NM_001111134
RefSeq - NM_001111135
RefSeq - NM_001111137
RefSeq - NM_001111138
RefSeq - NM_001111139
RefSeq Peptide - NP_001104598
RefSeq Peptide - NP_001104599
RefSeq Peptide - NP_001104601
RefSeq Peptide - NP_001104602
RefSeq Peptide - NP_001104604
RefSeq Peptide - NP_001104605
RefSeq Peptide - NP_001104607
RefSeq Peptide - NP_001104608
RefSeq Peptide - NP_001104609
RefSeq Peptide - NP_001104596
swissprot - A0A1D5P6V4
swissprot - A0A1D5P528
swissprot - A0A1D5PZY1
swissprot - A0A1D5PZL9
swissprot - A0A1D5PMQ1
swissprot - A0A1D5PHL7
swissprot - A0A1D5PBA0
swissprot - A0A1D5P7X6
swissprot - A0A1D5P777
swissprot - A0A1D5P764
Ensembl - ENSGALG00000043142
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1a3ENSDARG00000104598Danio rerio
 pcdh1a3ENSDARG00000103602Danio rerio
 pcdh1g9ENSDARG00000057519Danio rerio
 pcdh2aa1ENSDARG00000037695Danio rerio
 pcdh2aa15ENSDARG00000088136Danio rerio
 pcdh2ab1ENSDARG00000089874Danio rerio
 pcdh2ab1ENSDARG00000071904Danio rerio
 pcdh2ab12ENSDARG00000104080Danio rerio
 pcdh2ab2ENSDARG00000037691Danio rerio
 pcdh2ab2ENSDARG00000099468Danio rerio
 pcdh2ab3ENSDARG00000102719Danio rerio
 pcdh2ab6ENSDARG00000091043Danio rerio
 si:ch73-379j16.2ENSDARG00000099535Danio rerio
 si:dkey-262j3.7ENSDARG00000104141Danio rerio
 si:dkeyp-115d7.2ENSDARG00000089297Danio rerio
 PCDHA1ENSG00000204970Homo sapiens
 PCDHA2ENSG00000204969Homo sapiens
 PCDHA3ENSG00000255408Homo sapiens
 PCDHA4ENSG00000204967Homo sapiens
 PCDHA5ENSG00000204965Homo sapiens
 PCDHA6ENSG00000081842Homo sapiens
 PCDHA7ENSG00000204963Homo sapiens
 PCDHA8ENSG00000204962Homo sapiens
 PCDHA9ENSG00000204961Homo sapiens
 Q9UN75ENSG00000251664Homo sapiens
 Q9Y5I0ENSG00000239389Homo sapiens
 Q9Y5I1ENSG00000249158Homo sapiens
 Q9Y5I2ENSG00000250120Homo sapiens
 O88689ENSMUSG00000104252Mus musculus
 Pcdha1ENSMUSG00000103442Mus musculus
 Pcdha11ENSMUSG00000102206Mus musculus
 Pcdha12ENSMUSG00000103310Mus musculus
 Pcdha5ENSMUSG00000103092Mus musculus
 Pcdha6ENSMUSG00000103707Mus musculus
 Pcdha7ENSMUSG00000104318Mus musculus
 Pcdha8ENSMUSG00000103800Mus musculus
 Pcdha9ENSMUSG00000103770Mus musculus
 Q91Y20ENSMUSG00000007440Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH10ENSGALG0000000971936
ENSGALG0000004260635
PCDH1 / protocadherin-1 precursor / Q08174* / protocadherin 1*ENSGALG0000000255326
Q9BZA7* / Q9BZA8* / PCDH11Y* / PCDH11X* / protocadherin 11 X-linked* / protocadherin 11 Y-linked*ENSGALG0000000685124
PCDH15 / Q0ZM14 / Protocadherin-15 / Q99PJ1* / Q96QU1* / protocadherin related 15*ENSGALG0000000274422
PCDH9 / protocadherin 9 / Q9HC56*ENSGALG0000001690822
PCDH20* / Q8BIZ0* / Q8N6Y1* / AL592490.1* / protocadherin 20*ENSGALG0000001693421
PCDH7 / protocadherin 7 / O60245*ENSGALG0000003388318
Pcdhgc3* / protocadherin gamma subfamily C, 3*ENSGALG0000003662912
ENSGALG0000002393411


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030726  Protocadherin alpha-C2
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007399 nervous system development IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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