ENSMUSG00000103442


Mus musculus

Features
Gene ID: ENSMUSG00000103442
  
Biological name :Pcdha1
  
Synonyms : Pcdha1 / protocadherin alpha 1
  
Possible biological names infered from orthology : Q9Y5I3
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B2
Gene start: 36930184
Gene end: 37187661
  
Corresponding Affymetrix probe sets: 1420798_s_at (Mouse Genome 430 2.0 Array)   1424341_s_at (Mouse Genome 430 2.0 Array)   1451769_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000068828
Ensembl peptide - ENSMUSP00000142308
NCBI entrez gene - 116731     See in Manteia.
MGI - MGI:2150982
RefSeq - NM_054072
RefSeq Peptide - NP_473413
swissprot - Q641K6
swissprot - Q91Y21
Ensembl - ENSMUSG00000103442
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1a3ENSDARG00000104598Danio rerio
 pcdh1a3ENSDARG00000103602Danio rerio
 pcdh1g9ENSDARG00000057519Danio rerio
 pcdh2aa1ENSDARG00000037695Danio rerio
 pcdh2aa15ENSDARG00000088136Danio rerio
 pcdh2ab1ENSDARG00000071904Danio rerio
 pcdh2ab1ENSDARG00000089874Danio rerio
 pcdh2ab12ENSDARG00000104080Danio rerio
 pcdh2ab2ENSDARG00000099468Danio rerio
 pcdh2ab2ENSDARG00000037691Danio rerio
 pcdh2ab3ENSDARG00000102719Danio rerio
 pcdh2ab6ENSDARG00000091043Danio rerio
 si:ch73-379j16.2ENSDARG00000099535Danio rerio
 si:dkey-262j3.7ENSDARG00000104141Danio rerio
 si:dkeyp-115d7.2ENSDARG00000089297Danio rerio
 PCDHA2ENSGALG00000043142Gallus gallus
 PCDHA1ENSG00000204970Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q91Y20 / Pcdha11 / protocadherin alpha 11ENSMUSG0000000744080
Pcdha12 / protocadherin alpha 12 / Q9Y5I0* / PCDHA13* / protocadherin alpha 13*ENSMUSG0000010331080
O88689 / Pcdha4 / Protocadherin alpha-4 / Q9UN74*ENSMUSG0000010425280
Pcdha5 / protocadherin alpha 5 / Q9Y5H7*ENSMUSG0000010309280
Q91Y13 / Pcdha7 / Protocadherin alpha-7 / Q9Y5H5* / PCDHA9* / Q9UN72* / protocadherin alpha 9*ENSMUSG0000010431879
Pcdha6 / Q9UN73* / Q9Y5H6* / PCDHA8* / protocadherin alpha 6* / protocadherin alpha 8*ENSMUSG0000010370779
Pcdha11 / protocadherin alpha 11 / Q9Y5I1*ENSMUSG0000010220679
Pcdha9 / Q91Y11 / Protocadherin alpha-9 / Q9Y5I2* / PCDHA10* / protocadherin alpha 10*ENSMUSG0000010377078
Pcdha8 / protocadherin alpha 8 / Q9Y5H5* / PCDHA7* / PCDHA9* / Q9UN72* / protocadherin alpha 7* / protocadherin alpha 9*ENSMUSG0000010380078
Pcdhgc3 / protocadherin gamma subfamily C, 3ENSMUSG0000010291836
Pcdhga9ENSMUSG0000010244036
Pcdh7 / protocadherin 7 / O60245*ENSMUSG0000002910831
Pcdh11x / protocadherin 11 X-linked / Q9BZA7* / Q9BZA8* / PCDH11Y* / protocadherin 11 Y-linked*ENSMUSG0000003475530
Pcdh9 / protocadherin 9 / Q9HC56*ENSMUSG0000005542129
Pcdh15 / Q99PJ1 / Protocadherin-15 / Q96QU1* / protocadherin related 15*ENSMUSG0000005261327
Pcdh1 / protocadherin 1 / Q08174*ENSMUSG0000005137527
Pcdh20 / Q8BIZ0 / Protocadherin-20 / Q8N6Y1* / AL592490.1*ENSMUSG0000005050523


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030740  Protocadherin alpha-1
 IPR031904  Cadherin, C-terminal catenin-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: a1R/a1R
Genetic Background: involves: 101/Rl * C3H/Rl

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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