ENSMUSG00000102440


Mus musculus

Features
Gene ID: ENSMUSG00000102440
  
Biological name :Pcdhga9
  
Synonyms : Pcdhga9
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37736936
Gene end: 37841870
  
Corresponding Affymetrix probe sets: 1423628_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000089555
NCBI entrez gene - 93717     See in Manteia.
MGI - MGI:1935226
RefSeq - NM_033592
RefSeq Peptide - NP_291070
swissprot - Q91XX9
Ensembl - ENSMUSG00000102440
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdhgc3 / protocadherin gamma subfamily C, 3ENSMUSG0000010291839
Pcdha12 / protocadherin alpha 12 / Q9Y5I0* / PCDHA13* / protocadherin alpha 13*ENSMUSG0000010331037
Pcdha11 / protocadherin alpha 11 / Q9Y5I1*ENSMUSG0000010220637
Pcdha5 / protocadherin alpha 5 / Q9Y5H7*ENSMUSG0000010309236
Pcdha8 / protocadherin alpha 8 / Q9Y5H5* / PCDHA7* / PCDHA9* / Q9UN72* / protocadherin alpha 7* / protocadherin alpha 9*ENSMUSG0000010380036
Pcdha1 / protocadherin alpha 1 / Q9Y5I3*ENSMUSG0000010344236
O88689 / Pcdha4 / Protocadherin alpha-4 / Q9UN74*ENSMUSG0000010425236
Pcdha6 / Q9UN73* / Q9Y5H6* / PCDHA8* / protocadherin alpha 6* / protocadherin alpha 8*ENSMUSG0000010370736
Q91Y13 / Pcdha7 / Protocadherin alpha-7 / Q9Y5H5* / PCDHA9* / Q9UN72* / protocadherin alpha 9*ENSMUSG0000010431836
Pcdha9 / Q91Y11 / Protocadherin alpha-9 / Q9Y5I2* / PCDHA10* / protocadherin alpha 10*ENSMUSG0000010377035
Q91Y20 / Pcdha11 / protocadherin alpha 11ENSMUSG0000000744035
Pcdh7 / protocadherin 7 / O60245*ENSMUSG0000002910827
Pcdh11x / protocadherin 11 X-linked / Q9BZA7* / Q9BZA8* / PCDH11Y* / protocadherin 11 Y-linked*ENSMUSG0000003475527
Pcdh1 / protocadherin 1 / Q08174*ENSMUSG0000005137527
Pcdh9 / protocadherin 9 / Q9HC56*ENSMUSG0000005542126
Pcdh15 / Q99PJ1 / Protocadherin-15 / Q96QU1* / protocadherin related 15*ENSMUSG0000005261323
Pcdh20 / Q8BIZ0 / Protocadherin-20 / Q8N6Y1* / AL592490.1*ENSMUSG0000005050522


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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