ENSG00000156453


Homo sapiens

Features
Gene ID: ENSG00000156453
  
Biological name :PCDH1
  
Synonyms : PCDH1 / protocadherin 1 / Q08174
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q31.3
Gene start: 141853111
Gene end: 141879246
  
Corresponding Affymetrix probe sets: 203918_at (Human Genome U133 Plus 2.0 Array)   215277_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000424004
Ensembl peptide - ENSP00000424667
Ensembl peptide - ENSP00000424204
Ensembl peptide - ENSP00000424163
Ensembl peptide - ENSP00000287008
Ensembl peptide - ENSP00000378043
NCBI entrez gene - 5097     See in Manteia.
OMIM - 603626
RefSeq - XM_017009518
RefSeq - NM_002587
RefSeq - NM_032420
RefSeq - XM_005268452
RefSeq Peptide - NP_115796
RefSeq Peptide - NP_002578
swissprot - H0Y9I5
swissprot - Q08174
swissprot - D6RAX3
swissprot - H0Y9F5
swissprot - D6RBG2
Ensembl - ENSG00000156453
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh1aENSDARG00000062720Danio rerio
 pcdh1bENSDARG00000036175Danio rerio
 PCDH1ENSGALG00000002553Gallus gallus
 Pcdh1ENSMUSG00000051375Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCDH7 / O60245 / protocadherin 7ENSG0000016985142
PCDH9 / Q9HC56 / protocadherin 9ENSG0000018422638
Q9BZA7 / PCDH11X / protocadherin 11 X-linkedENSG0000010229037
Q9BZA8 / PCDH11Y / protocadherin 11 Y-linkedENSG0000009971532
PCDHA3 / Q9Y5H8 / protocadherin alpha 3ENSG0000025540825
PCDHA8 / Q9Y5H6 / protocadherin alpha 8ENSG0000020496224
AL592490.1ENSG0000019799124
PCDH20 / Q8N6Y1 / protocadherin 20ENSG0000028016524
PCDHA4 / Q9UN74 / protocadherin alpha 4ENSG0000020496724
Q9Y5I2 / PCDHA10 / protocadherin alpha 10ENSG0000025012024
PCDHA6 / Q9UN73 / protocadherin alpha 6ENSG0000008184224
PCDHA1 / Q9Y5I3 / protocadherin alpha 1ENSG0000020497023
PCDHA5 / Q9Y5H7 / protocadherin alpha 5ENSG0000020496523
Q9UN75 / PCDHA12 / protocadherin alpha 12ENSG0000025166423
PCDHA2 / Q9Y5H9 / protocadherin alpha 2ENSG0000020496923
Q9Y5I1 / PCDHA11 / protocadherin alpha 11ENSG0000024915823
PCDHA9 / Q9Y5H5 / protocadherin alpha 9ENSG0000020496123
Q9Y5I0 / PCDHA13 / protocadherin alpha 13ENSG0000023938923
PCDHA7 / Q9UN72 / protocadherin alpha 7ENSG0000020496323
PCDH15 / Q96QU1 / protocadherin related 15ENSG0000015027520


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR013585  Protocadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling TAS
 biological_processGO:0007399 nervous system development TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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