ENSDARG00000036645


Danio rerio

Features
Gene ID: ENSDARG00000036645
  
Biological name :rcbtb1
  
Synonyms : rcbtb1 / regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1
  
Possible biological names infered from orthology : Q8NDN9 / RCC1 and BTB domain containing protein 1
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 46635236
Gene end: 46650041
  
Corresponding Affymetrix probe sets: Dr.5968.1.S1_at (Zebrafish Array)   NM_199991_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124696
Ensembl peptide - ENSDARP00000053221
Ensembl peptide - ENSDARP00000148223
NCBI entrez gene - 336007     See in Manteia.
RefSeq - NM_199991
RefSeq - XM_005170970
RefSeq Peptide - NP_956285
swissprot - F8W2K5
swissprot - B8A4R1
ZFIN ID - ZDB-GENE-030131-7951
Ensembl - ENSDARG00000036645
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RCBTB1ENSGALG00000017008Gallus gallus
 Q8NDN9ENSG00000136144Homo sapiens
 Rcbtb1ENSMUSG00000035469Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rcbtb2 / regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 / O95199* / RCC1 and BTB domain containing protein 2*ENSDARG0000009068773
rpgra / retinitis pigmentosa GTPase regulator a / RPGR* / Q92834* / retinitis pigmentosa GTPase regulator*ENSDARG0000005661723
rpgrb / retinitis pigmentosa GTPase regulator b / RPGR* / Q92834* / retinitis pigmentosa GTPase regulator*ENSDARG0000005707422
rcc2 / Q6NYE2 / regulator of chromosome condensation 2 / Q8BK67* / Q9P258* / Protein RCC2 *ENSDARG0000001151018
rcc1 / regulator of chromosome condensation 1 / P18754* / Q8VE37*ENSDARG0000003715816
sergef / secretion regulating guanine nucleotide exchange factor / Q80YD6* / Q9UGK8*ENSDARG0000007098615
rcc1l / RCC1 like / Q96I51* / Q9CYF5* / reculator of chromosome condensation 1 like*ENSDARG0000005958315


Protein motifs (from Interpro)
Interpro ID Name
 IPR000210  BTB/POZ domain
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
 IPR011333  SKP1/BTB/POZ domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IMP
 biological_processGO:0061298 retina vasculature development in camera-type eye IGI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye vasculature development disrupted , abnormal
Show

 ZFA:0001285 intersegmental vessel intersegmental vessel morphology , abnormal
intersegmental vessel decreased thickness , abnormal
intersegmental vessel truncated , abnormal
Show

 ZFA:0007057 ocular blood vessel ocular blood vessel morphology , abnormal
ocular blood vessel decreased area , abnormal
ocular blood vessel decreased thickness , abnormal
ocular blood vessel blood vessel lumenization disrupted , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr