ENSDARG00000057074


Danio rerio

Features
Gene ID: ENSDARG00000057074
  
Biological name :rpgrb
  
Synonyms : retinitis pigmentosa GTPase regulator b / rpgrb
  
Possible biological names infered from orthology : Q92834 / retinitis pigmentosa GTPase regulator / RPGR
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 29770966
Gene end: 29790222
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000083057
Ensembl peptide - ENSDARP00000109241
NCBI entrez gene - 557752     See in Manteia.
RefSeq - NM_001312676
RefSeq - NM_001312677
RefSeq Peptide - NP_001299605
RefSeq Peptide - NP_001299606
swissprot - F1QEL3
swissprot - F1QM29
ZFIN ID - ZDB-GENE-081015-2
Ensembl - ENSDARG00000057074
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPGRENSGALG00000036284Gallus gallus
 RPGRENSG00000156313Homo sapiens
 RpgrENSMUSG00000031174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rpgra / retinitis pigmentosa GTPase regulator a / RPGR* / Q92834* / retinitis pigmentosa GTPase regulator*ENSDARG0000005661730
rcbtb2 / regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 / O95199* / RCC1 and BTB domain containing protein 2*ENSDARG000000906879
rcc2 / Q6NYE2 / regulator of chromosome condensation 2 / Q8BK67* / Q9P258* / Protein RCC2 *ENSDARG000000115108
rcbtb1 / regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 / Q8NDN9* / RCC1 and BTB domain containing protein 1*ENSDARG000000366458
rcc1l / RCC1 like / Q96I51* / Q9CYF5* / reculator of chromosome condensation 1 like*ENSDARG000000595838
rcc1 / regulator of chromosome condensation 1 / P18754* / Q8VE37*ENSDARG000000371587
sergef / secretion regulating guanine nucleotide exchange factor / Q80YD6* / Q9UGK8*ENSDARG000000709866


Protein motifs (from Interpro)
Interpro ID Name
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007018 microtubule-based movement IMP
 biological_processGO:0010842 retina layer formation IMP
 biological_processGO:0046548 retinal rod cell development IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0060287 epithelial cilium movement involved in determination of left/right asymmetry IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium decreased length , abnormal
Show

 ZFA:0000008 brain brain hydrocephalic , abnormal
brain apoptotic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000152 retina retina apoptotic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
post-vent region decreased length , abnormal
post-vent region increased curvature , abnormal
Show

 ZFA:0009262 retinal cone cell retinal cone cell absent , abnormal
Show

 ZFA:0009275 retinal rod cell retinal rod cell photoreceptor outer segment malformed , abnormal
retinal rod cell photoreceptor outer segment absent , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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