ENSG00000156313


Homo sapiens

Features
Gene ID: ENSG00000156313
  
Biological name :RPGR
  
Synonyms : Q92834 / retinitis pigmentosa GTPase regulator / RPGR
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: p11.4
Gene start: 38269163
Gene end: 38327564
  
Corresponding Affymetrix probe sets: 207624_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496427
Ensembl peptide - ENSP00000496446
Ensembl peptide - ENSP00000496728
Ensembl peptide - ENSP00000322219
Ensembl peptide - ENSP00000343671
Ensembl peptide - ENSP00000367766
Ensembl peptide - ENSP00000417336
Ensembl peptide - ENSP00000417574
Ensembl peptide - ENSP00000418926
Ensembl peptide - ENSP00000419276
Ensembl peptide - ENSP00000493468
Ensembl peptide - ENSP00000493596
Ensembl peptide - ENSP00000493681
Ensembl peptide - ENSP00000494557
Ensembl peptide - ENSP00000494745
Ensembl peptide - ENSP00000495537
Ensembl peptide - ENSP00000496030
NCBI entrez gene - 6103     See in Manteia.
OMIM - 312610
RefSeq - XM_011543940
RefSeq - XM_005272633
RefSeq - XM_017029711
RefSeq - NM_000328
RefSeq - NM_001034853
RefSeq - XM_017029712
RefSeq - XM_017029710
RefSeq Peptide - NP_001030025
RefSeq Peptide - NP_000319
swissprot - Q92834
swissprot - A0A0S2Z4Y6
swissprot - H7C4L1
swissprot - H7C4H4
Ensembl - ENSG00000156313
  
Related genetic diseases (OMIM): 300029 - Retinitis pigmentosa 3, 300029
  300455 - Retinitis pigmentosa, X-linked, and sinorespiratory infections, with or without deafness, 300455
  300834 - Macular degeneration, X-linked atrophic, 300834
  304020 - Cone-rod dystrophy, X-linked, 1, 304020
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpgraENSDARG00000056617Danio rerio
 rpgrbENSDARG00000057074Danio rerio
 RPGRENSGALG00000036284Gallus gallus
 RpgrENSMUSG00000031174Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O95199 / RCBTB2 / RCC1 and BTB domain containing protein 2ENSG0000013616113
Q8NDN9 / RCBTB1 / RCC1 and BTB domain containing protein 1ENSG0000013614412
RCC2 / Q9P258 / regulator of chromosome condensation 2ENSG0000017905110
Q9UGK8 / SERGEF / secretion regulating guanine nucleotide exchange factorENSG0000012915810
RCC1 / P18754 / regulator of chromosome condensation 1ENSG0000018019810
RCC1L / Q96I51 / RCC1 likeENSG000002745239


Protein motifs (from Interpro)
Interpro ID Name
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport TAS
 biological_processGO:0007601 visual perception IMP
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0042073 intraciliary transport ISS
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0001750 photoreceptor outer segment IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus ISS
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0036064 ciliary basal body ISS
 cellular_componentGO:0036126 sperm flagellum ISS
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000388 Otitis media 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000540 Hypermetropia 
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 HP:0000545 Myopia 
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000551 Abnormal color vision 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000577 Exotropia 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000603 Central scotoma 
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 HP:0000608 Macular degeneration 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001939 Metabolism abnormality 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002837 Bronchitis 
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 HP:0005101 High-frequency hearing loss 
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 HP:0005376 Increased susceptibility to haemophilus influenzae infections 
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007641 Secondary dyschromatopsia 
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 HP:0007663 Decreased central vision 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007722 Loss of retinal pigment epithelium 
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 HP:0007750 Foveal hypoplasia 
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 HP:0007793 Bilateral macular retinal pigment epithelial mottling 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0007939 Almost complete colorblindness except ability to see blue 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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 HP:0011109 Chronic sinusitis "A chronic form of `sinusitis` (HP:0000246)." [HPO:probinson]
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 HP:0012043 Pendular nystagmus "Rhythmic, involuntary sinusoidal oscillations of one or both eyes. The waveform of pendular nystagmus may occur in any direction." [HPO:probinson]
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 HP:0030637 Cone dysfunction 
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 HP:0100750 Atelectasis 
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 HP:0200056 Macular scarring 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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