ENSDARG00000036893


Danio rerio

Features
Gene ID: ENSDARG00000036893
  
Biological name :f13a1b
  
Synonyms : coagulation factor XIII, A1 polypeptide b / f13a1b
  
Possible biological names infered from orthology : coagulation factor XIII A chain / F13A1 / P00488 / Q8BH61
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 8267985
Gene end: 8344243
  
Corresponding Affymetrix probe sets: Dr.16206.1.A1_at (Zebrafish Array)   Dr.16206.1.A1_s_at (Zebrafish Array)   Dr.21489.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000147730
Ensembl peptide - ENSDARP00000093311
Ensembl peptide - ENSDARP00000123898
Ensembl peptide - ENSDARP00000153253
NCBI entrez gene - 561287     See in Manteia.
swissprot - F1R1R7
ZFIN ID - ZDB-GENE-030131-9634
Ensembl - ENSDARG00000036893
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 F13A1ENSGALG00000012802Gallus gallus
 F13A1ENSG00000124491Homo sapiens
 F13a1ENSMUSG00000039109Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
f13a1a.1 / coagulation factor XIII, A1 polypeptide a, tandem duplicate 1 / F13A1* / P00488* / Q8BH61* / coagulation factor XIII A chain*ENSDARG0000004545345
tgm1l1 / transglutaminase 1 like 1 / TGM1* / P22735* / transglutaminase 1*ENSDARG0000010210639
tgm1 / transglutaminase 1, K polypeptide / P22735* / transglutaminase 1*ENSDARG0000001779938
tgm1l4 / transglutaminase 1 like 4 / TGM1* / P22735* / transglutaminase 1*ENSDARG0000010140737
tgm1l2 / transglutaminase 1 like 2 / TGM1* / P22735* / transglutaminase 1*ENSDARG0000010159536
tgm1l3 / transglutaminase 1 like 3 / TGM1* / P22735* / transglutaminase 1*ENSDARG0000000591335
F13A1 (1 of many) / coagulation factor XIII A chain / F13A1* / P00488*ENSDARG0000009483233
tgm2b / transglutaminase 2b / TGM2* / P21981* / P21980* / transglutaminase 2* / Protein-glutamine gamma-glutamyltransferase 2 *ENSDARG0000007409432
tgm2a / transglutaminase 2, C polypeptide A / TGM2* / P21981* / P21980* / transglutaminase 2* / Protein-glutamine gamma-glutamyltransferase 2 *ENSDARG0000007015731
tgm2l / transglutaminase 2, likeENSDARG0000009338131
tgm5l / transglutaminase 5, like / TGM5* / TGM6* / TGM7* / TGM3* / EPB42* / Q96PF1* / O43548* / O95932* / P16452* / P49222* / Q08188* / Q08189* / Q9D7I9* / transglutaminase 7* / transglutam...ENSDARG0000009883728
tgm8 / transglutaminase 8 / TGM7* / TGM6* / TGM3* / TGM5* / EPB42* / Q08189* / Q96PF1* / O43548* / Q9D7I9* / O95932* / P16452* / P49222* / Q08188* / transglutaminase 6* / transglutaminase 7...ENSDARG0000009765115


Protein motifs (from Interpro)
Interpro ID Name
 IPR001102  Transglutaminase, N-terminal
 IPR002931  Transglutaminase-like
 IPR008958  Transglutaminase, C-terminal
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR023608  Protein-glutamine gamma-glutamyltransferase, animal
 IPR034810  Coagulation factor XIII A chain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0018149 peptide cross-linking IEA
 biological_processGO:0072378 blood coagulation, fibrin clot formation IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003810 protein-glutamine gamma-glutamyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Platelet degranulation
Common Pathway of Fibrin Clot Formation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr