ENSG00000124491


Homo sapiens

Features
Gene ID: ENSG00000124491
  
Biological name :F13A1
  
Synonyms : coagulation factor XIII A chain / F13A1 / P00488
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p25.1
Gene start: 6144085
Gene end: 6321013
  
Corresponding Affymetrix probe sets: 203305_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000413334
Ensembl peptide - ENSP00000416295
Ensembl peptide - ENSP00000264870
Ensembl peptide - ENSP00000394693
Ensembl peptide - ENSP00000411114
NCBI entrez gene - 2162     See in Manteia.
OMIM - 134570
RefSeq - NM_000129
RefSeq Peptide - NP_000120
swissprot - H0Y4W5
swissprot - H0Y796
swissprot - A6PVK5
swissprot - P00488
swissprot - Q9NQP5
Ensembl - ENSG00000124491
  
Related genetic diseases (OMIM): 188050 - {Venous thrombosis, protection against}, 188050
  608446 - {Myocardial infarction, protection against}, 608446
  613225 - Factor XIIIA deficiency, 613225
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 F13A1 (1 of many)ENSDARG00000094832Danio rerio
 f13a1a.1ENSDARG00000045453Danio rerio
 f13a1bENSDARG00000036893Danio rerio
 F13A1ENSGALG00000012802Gallus gallus
 F13a1ENSMUSG00000039109Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TGM1 / P22735 / transglutaminase 1ENSG0000009229542
TGM2 / P21980 / transglutaminase 2ENSG0000019895934
TGM6 / O95932 / transglutaminase 6ENSG0000016694833
TGM5 / O43548 / transglutaminase 5ENSG0000010405532
TGM3 / Q08188 / transglutaminase 3ENSG0000012578032
TGM7 / Q96PF1 / transglutaminase 7ENSG0000015949529
TGM4 / P49221 / transglutaminase 4ENSG0000016381029
EPB42 / P16452 / erythrocyte membrane protein band 4.2ENSG0000016694725


Protein motifs (from Interpro)
Interpro ID Name
 IPR001102  Transglutaminase, N-terminal
 IPR002931  Transglutaminase-like
 IPR008958  Transglutaminase, C-terminal
 IPR013783  Immunoglobulin-like fold
 IPR013808  Transglutaminase, active site
 IPR014756  Immunoglobulin E-set
 IPR023608  Protein-glutamine gamma-glutamyltransferase, animal
 IPR034810  Coagulation factor XIII A chain
 IPR036238  Transglutaminase, C-terminal domain superfamily
 IPR036985  Transglutaminase-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002576 platelet degranulation TAS
 biological_processGO:0007596 blood coagulation TAS
 biological_processGO:0007599 hemostasis IEA
 biological_processGO:0018149 peptide cross-linking IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway TAS
 biological_processGO:0072378 blood coagulation, fibrin clot formation IEA
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031093 platelet alpha granule lumen TAS
 cellular_componentGO:0072562 blood microparticle HDA
 molecular_functionGO:0003810 protein-glutamine gamma-glutamyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016746 transferase activity, transferring acyl groups IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Platelet degranulation
Common Pathway of Fibrin Clot Formation
Interleukin-4 and Interleukin-13 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000421 Epistaxis 
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 HP:0000978 Ecchymoses 
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 HP:0002170 Intracranial hemorrhage "A hemorrhage (bleeding) occuring within the skull." [HPO:curators]
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 HP:0003577 Onset at birth 
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 HP:0005261 Joint hemorrhage 
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 HP:0007420 Spontaneous hematomas 
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 HP:0008357 Partial deficiency of factor XIII:C 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000124491 F13A1 / P00488 / coagulation factor XIII A chain  / complex
 ENSG00000143278 F13B / P05160 / coagulation factor XIII B chain  / complex
 ENSG00000180210 F2 / P00734 / coagulation factor II, thrombin  / reaction






 

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contact: otassy@igbmc.fr