ENSDARG00000037932


Danio rerio

Features
Gene ID: ENSDARG00000037932
  
Biological name :lin7b
  
Synonyms : lin7b / lin-7 homolog B (C. elegans)
  
Possible biological names infered from orthology : B / lin-7 homolog B, crumbs cell polarity complex component / O88951 / Q9HAP6
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 31933893
Gene end: 31944709
  
Corresponding Affymetrix probe sets: Dr.10254.1.A1_at (Zebrafish Array)   NM_001020733_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000120744
Ensembl peptide - ENSDARP00000112866
NCBI entrez gene - 553768     See in Manteia.
RefSeq - NM_001020733
RefSeq Peptide - NP_001018569
swissprot - F1RDK3
swissprot - F1QBB5
ZFIN ID - ZDB-GENE-041011-1
Ensembl - ENSDARG00000037932
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LIN7BENSG00000104863Homo sapiens
 B ENSMUSG00000003872Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lin7c / lin-7 homolog C (C. elegans)ENSDARG0000002732274
lin7a / lin-7 homolog A (C. elegans) / O14910* / Q8JZS0* / lin-7 homolog A, crumbs cell polarity complex component*ENSDARG0000001341470
sntb1 / syntrophin, basic 1 / Q99L88* / Q13884* / syntrophin beta 1* / Beta-1-syntrophin *ENSDARG0000004172926
gopc / golgi-associated PDZ and coiled-coil motif containing / Q8BH60* / Q9HD26* / AL132671.2*ENSDARG0000002311725
sntb2 / syntrophin, beta 2 / Q13425* / Q61235* / syntrophin, basic 2*ENSDARG0000005176323
sntg2 / syntrophin, gamma 2 / Q925E0* / Q9NY99* / Gamma-2-syntrophin *ENSDARG0000010166022
SNTA1 / syntrophin alpha 1 / Q13424*ENSDARG0000009842020
sntg1 / syntrophin, gamma 1 / Q9NSN8*ENSDARG0000006183219


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR004172  L27 domain
 IPR014775  L27 domain, C-terminal
 IPR017365  Protein lin-7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IEA
 biological_processGO:0007269 neurotransmitter secretion IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0045199 maintenance of epithelial cell apical/basal polarity IBA
 biological_processGO:1903361 protein localization to basolateral plasma membrane IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005911 cell-cell junction IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse IBA
 cellular_componentGO:0097025 MPP7-DLG1-LIN7 complex IEA
 cellular_componentGO:0098793 presynapse IEA
 molecular_functionGO:0097016 L27 domain binding IEA


Pathways (from Reactome)
Pathway description
Dopamine Neurotransmitter Release Cycle
RHO GTPases Activate Rhotekin and Rhophilins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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