ENSDARG00000023117


Danio rerio

Features
Gene ID: ENSDARG00000023117
  
Biological name :gopc
  
Synonyms : golgi-associated PDZ and coiled-coil motif containing / gopc
  
Possible biological names infered from orthology : AL132671.2 / Q8BH60 / Q9HD26
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 42246948
Gene end: 42281434
  
Corresponding Affymetrix probe sets: Dr.10191.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000061134
NCBI entrez gene - 326887     See in Manteia.
RefSeq - NM_200557
RefSeq Peptide - NP_956851
swissprot - Q6PHG0
ZFIN ID - ZDB-GENE-030131-5086
Ensembl - ENSDARG00000023117
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000014902Gallus gallus
 AL132671.2ENSG00000282218Homo sapiens
 GOPCENSG00000047932Homo sapiens
 GopcENSMUSG00000019861Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sntb1 / syntrophin, basic 1 / Q99L88* / Q13884* / syntrophin beta 1* / Beta-1-syntrophin *ENSDARG0000004172915
sntb2 / syntrophin, beta 2 / Q13425* / Q61235* / syntrophin, basic 2*ENSDARG0000005176314
sntg2 / syntrophin, gamma 2 / Q925E0* / Q9NY99* / Gamma-2-syntrophin *ENSDARG0000010166013
SNTA1 / syntrophin alpha 1 / Q13424*ENSDARG0000009842012
lin7b / lin-7 homolog B (C. elegans) / B * / O88951* / Q9HAP6* / lin-7 homolog B, crumbs cell polarity complex component*ENSDARG0000003793212
lin7c / lin-7 homolog C (C. elegans)ENSDARG0000002732212
lin7a / lin-7 homolog A (C. elegans) / O14910* / Q8JZS0* / lin-7 homolog A, crumbs cell polarity complex component*ENSDARG0000001341412
sntg1 / syntrophin, gamma 1 / Q9NSN8*ENSDARG0000006183211


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
RHO GTPases regulate CFTR trafficking


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000025953 rhoq / ras homolog family member Q / P17081* / Q8R527* / Rho-related GTP-binding protein RhoQ *  / reaction / complex
 ENSDARG00000023117 gopc / golgi-associated PDZ and coiled-coil motif containing / Q8BH60* / Q9HD26* / AL132671.2*  / complex
 ENSDARG00000041107 cftr / Q1LX78 / cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) / P13569* / P26361* / cystic fibrosis transmembrane conductance regulator*  / complex






 

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